Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15208	7957746	NM_213611	SLC25A3		solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7957746	8132943	NM_001762	CCT6A		0.874895	3.305628e-34	5.727662e-30	5.727662e-30
2	7957746	8073457	NM_001469	XRCC6		0.854615	4.426033e-31	7.668987e-27	3.834493e-27
3	7957746	8023063	NM_001001937	ATP5A1		0.852911	7.707463e-31	1.335472e-26	4.451573e-27
4	7957746	7918345	NM_002790	PSMA5		0.852031	1.023780e-30	1.773903e-26	4.434757e-27
5	7957746	8042335	NM_003375	VDAC2		0.844292	1.149683e-29	1.992056e-25	3.984112e-26
6	7957746	8062349	NM_002951	RPN2		0.842552	1.944520e-29	3.369269e-25	5.615448e-26
7	7957746	7903619	NM_006513	SARS		0.841339	2.795053e-29	4.842989e-25	6.918555e-26
8	7957746	8136631	NM_003143	SSBP1		0.838753	5.995787e-29	1.038890e-24	1.298613e-25
9	7957746	8109368	NM_005754	G3BP1		0.837633	8.309820e-29	1.439843e-24	1.599825e-25
10	7957746	8018600	NM_014230	SRP68		0.837336	9.057101e-29	1.569324e-24	1.569324e-25
11	7957746	8050908	NM_000182	HADHA		0.834107	2.285210e-28	3.959584e-24	3.599621e-25
12	7957746	7973902	NM_003136	SRP54		0.832052	4.076237e-28	7.062896e-24	5.885747e-25
13	7957746	7946728	NM_148976	PSMA1		0.831709	4.486889e-28	7.774433e-24	5.980333e-25
14	7957746	7905395	NM_002796	PSMB4		0.831495	4.762899e-28	8.252675e-24	5.894768e-25
15	7957746	8062880	NM_003404	YWHAB		0.830485	6.305519e-28	1.092557e-23	7.283715e-25
16	7957746	8170971	NM_001363	DKC1		0.829768	7.685574e-28	1.331679e-23	8.322996e-25
17	7957746	7980463	NM_012245	SNW1		0.829309	8.719174e-28	1.510771e-23	8.886890e-25
18	7957746	7939137	NM_006360	EIF3M		0.829274	8.803203e-28	1.525331e-23	8.474061e-25
19	7957746	7942553	NM_014752	SPCS2		0.829068	9.316582e-28	1.614284e-23	8.496232e-25
20	7957746	8166805	NM_005765	ATP6AP2		0.828698	1.031045e-27	1.786491e-23	8.932457e-25
21	7957746	8052562	NM_006430	CCT4		0.824805	2.952310e-27	5.115467e-23	2.435937e-24
22	7957746	8171516	NM_002893	RBBP7		0.823457	4.224962e-27	7.320592e-23	3.327542e-24
23	7957746	7950644	NM_004549	NDUFC2		0.823170	4.557720e-27	7.897161e-23	3.433548e-24
24	7957746	8018315	NM_006937	SUMO2		0.822054	6.113878e-27	1.059352e-22	4.413965e-24
25	7957746	7934852	NM_005271	GLUD1		0.821116	7.814378e-27	1.353997e-22	5.415989e-24
26	7957746	8146216	NM_001135694	VDAC3		0.821071	7.906300e-27	1.369925e-22	5.268941e-24
27	7957746	7899774	NM_004964	HDAC1		0.820939	8.184540e-27	1.418135e-22	5.252353e-24
28	7957746	8178322	NM_006937	SUMO2		0.820818	8.446489e-27	1.463523e-22	5.226868e-24
29	7957746	8092564	NM_004593	TRA2B		0.820578	8.989936e-27	1.557686e-22	5.371332e-24
30	7957746	8091048	NR_023350	COPB2		0.820281	9.710240e-27	1.682493e-22	5.608311e-24
31	7957746	7997230	NM_002811	PSMD7		0.820062	1.027898e-26	1.781040e-22	5.745289e-24
32	7957746	8101324	NM_031370	HNRNPD		0.819346	1.236787e-26	2.142980e-22	6.696813e-24
33	7957746	7920317	NM_004515	ILF2		0.819086	1.322464e-26	2.291433e-22	6.943736e-24
34	7957746	8139706	NM_014302	SEC61G		0.818535	1.523905e-26	2.640471e-22	7.766091e-24
35	7957746	7924351	NM_004446	EPRS		0.818445	1.559192e-26	2.701611e-22	7.718889e-24
36	7957746	8094704	NM_005339	UBE2K		0.818418	1.570311e-26	2.720878e-22	7.557994e-24
37	7957746	8080991	NM_194247	HNRNPA3		0.818024	1.737109e-26	3.009889e-22	8.134835e-24
38	7957746	8050278	NM_005742	PDIA6		0.816917	2.303617e-26	3.991477e-22	1.050389e-23
39	7957746	8101043	NM_203505	G3BP2		0.816812	2.365891e-26	4.099379e-22	1.051123e-23
40	7957746	7939242	NM_005898	CAPRIN1		0.816642	2.470159e-26	4.280044e-22	1.070011e-23
41	7957746	7912198	NM_001428	ENO1		0.815895	2.984220e-26	5.170759e-22	1.261161e-23
42	7957746	8135235	NM_004279	PMPCB		0.815842	3.024458e-26	5.240478e-22	1.247733e-23
43	7957746	7976189	NM_002802	PSMC1		0.815050	3.692164e-26	6.397413e-22	1.487770e-23
44	7957746	8081945	NM_004547	NDUFB4		0.814841	3.890815e-26	6.741615e-22	1.532185e-23
45	7957746	8093314	NM_004547	NDUFB4		0.814841	3.890815e-26	6.741615e-22	1.498137e-23
46	7957746	8088339	NM_001660	ARF4		0.814438	4.304210e-26	7.457905e-22	1.621284e-23
47	7957746	7943176	NM_004268	MED17		0.813616	5.285062e-26	9.157427e-22	1.948389e-23
48	7957746	8046590	NM_194247	HNRNPA3		0.813206	5.852486e-26	1.014060e-21	2.112626e-23
49	7957746	8148333	NM_015137	EFR3A		0.811597	8.714229e-26	1.509914e-21	3.081458e-23
50	7957746	8025429	NM_005968	HNRNPM		0.811181	9.651861e-26	1.672378e-21	3.344756e-23

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.