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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 13860.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13860 8081945 NM_004547 NDUFB4 link to infopage NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa

Fetching correlation data, please wait...
Getting list of correlations for id 13860.
Getting list of p-values for id 13860.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.097 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8081945 8093314 NM_004547 NDUFB4 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8081945 8023063 NM_001001937 ATP5A1 link to infopage 0.846092 6.628023e-30 1.148437e-25 5.742187e-26
3 8081945 8052562 NM_006430 CCT4 link to infopage 0.830368 6.512242e-28 1.128376e-23 3.761254e-24
4 8081945 8139706 NM_014302 SEC61G link to infopage 0.826799 1.728427e-27 2.994846e-23 7.487115e-24
5 8081945 8073192 NM_006003 UQCRFS1 link to infopage 0.820626 8.878528e-27 1.538383e-22 3.076765e-23
6 8081945 7957746 NM_213611 SLC25A3 link to infopage 0.814841 3.890815e-26 6.741615e-22 1.123603e-22
7 8081945 8172358 NM_153477 UXT link to infopage 0.812510 6.956290e-26 1.205316e-21 1.721881e-22
8 8081945 8022972 NM_000972 RPL7A link to infopage 0.810136 1.246591e-25 2.159969e-21 2.699961e-22
9 8081945 8042720 NM_006429 CCT7 link to infopage 0.808497 1.855699e-25 3.215370e-21 3.572633e-22
10 8081945 7918345 NM_002790 PSMA5 link to infopage 0.802401 7.890284e-25 1.367150e-20 1.367150e-21
11 8081945 7950644 NM_004549 NDUFC2 link to infopage 0.802340 8.002980e-25 1.386676e-20 1.260615e-21
12 8081945 8062349 NM_002951 RPN2 link to infopage 0.801742 9.199133e-25 1.593934e-20 1.328278e-21
13 8081945 8178322 NM_006937 SUMO2 link to infopage 0.801431 9.887937e-25 1.713283e-20 1.317910e-21
14 8081945 7949075 NM_016404 TRMT112 link to infopage 0.801000 1.092539e-24 1.893041e-20 1.352172e-21
15 8081945 8075798 NM_003753 EIF3D link to infopage 0.799488 1.547794e-24 2.681863e-20 1.787909e-21
16 8081945 8042335 NM_003375 VDAC2 link to infopage 0.798164 2.095126e-24 3.630224e-20 2.268890e-21
17 8081945 8109368 NM_005754 G3BP1 link to infopage 0.796006 3.414306e-24 5.915969e-20 3.479982e-21
18 8081945 8028514 NM_013234 EIF3K link to infopage 0.794809 4.465853e-24 7.737984e-20 4.298880e-21
19 8081945 8064844 NM_002592 PCNA link to infopage 0.794569 4.711798e-24 8.164133e-20 4.296912e-21
20 8081945 8015712 NM_001040431 CCDC56 link to infopage 0.793651 5.780495e-24 1.001586e-19 5.007932e-21
21 8081945 7989619 NM_000942 PPIB link to infopage 0.786996 2.468131e-23 4.276531e-19 2.036443e-20
22 8081945 8000323 NM_005003 NDUFAB1 link to infopage 0.785189 3.627319e-23 6.285055e-19 2.856843e-20
23 8081945 7906662 NM_016406 UFC1 link to infopage 0.783821 4.843710e-23 8.392696e-19 3.648998e-20
24 8081945 7911559 NM_017971 MRPL20 link to infopage 0.783574 5.101960e-23 8.840166e-19 3.683402e-20
25 8081945 8039939 NM_017971 MRPL20 link to infopage 0.783574 5.101960e-23 8.840166e-19 3.536066e-20
26 8081945 7933164 NM_004966 HNRNPF link to infopage 0.783496 5.186636e-23 8.986884e-19 3.456494e-20
27 8081945 8148270 NM_005005 NDUFB9 link to infopage 0.781487 7.893908e-23 1.367777e-18 5.065842e-20
28 8081945 8018315 NM_006937 SUMO2 link to infopage 0.780915 8.889742e-23 1.540326e-18 5.501163e-20
29 8081945 8002919 NM_001130089 KARS link to infopage 0.780899 8.920761e-23 1.545700e-18 5.330001e-20
30 8081945 8027650 NM_005499 UBA2 link to infopage 0.778680 1.409614e-22 2.442439e-18 8.141462e-20
31 8081945 8130952 NM_002793 PSMB1 link to infopage 0.778175 1.563064e-22 2.708321e-18 8.736520e-20
32 8081945 8041257 NM_017964 SLC30A6 link to infopage 0.777898 1.654160e-22 2.866164e-18 8.956762e-20
33 8081945 7934367 NM_004034 ANXA7 link to infopage 0.775853 2.505783e-22 4.341770e-18 1.315688e-19
34 8081945 8073645 NM_015380 SAMM50 link to infopage 0.775644 2.613672e-22 4.528710e-18 1.331973e-19
35 8081945 7901038 NM_001012 RPS8 link to infopage 0.774340 3.397299e-22 5.886500e-18 1.681857e-19
36 8081945 8152465 NM_003756 EIF3H link to infopage 0.773106 4.347572e-22 7.533039e-18 2.092511e-19
37 8081945 8073457 NM_001469 XRCC6 link to infopage 0.772845 4.578877e-22 7.933820e-18 2.144276e-19
38 8081945 7944216 NM_006476 ATP5L link to infopage 0.772772 4.645790e-22 8.049760e-18 2.118358e-19
39 8081945 8048120 NM_004044 ATIC link to infopage 0.772412 4.990024e-22 8.646215e-18 2.216978e-19
40 8081945 8041000 NM_007266 GPN1 link to infopage 0.771372 6.131865e-22 1.062468e-17 2.656171e-19
41 8081945 8135576 NM_015641 TES link to infopage 0.770722 6.970042e-22 1.207699e-17 2.945608e-19
42 8081945 8132070 NM_002047 GARS link to infopage 0.769285 9.237700e-22 1.600616e-17 3.810991e-19
43 8081945 7903619 NM_006513 SARS link to infopage 0.768408 1.096077e-21 1.899172e-17 4.416680e-19
44 8081945 8047641 NM_177538 CYP20A1 link to infopage 0.768396 1.098485e-21 1.903345e-17 4.325785e-19
45 8081945 8020806 NM_017831 RNF125 link to infopage 0.768284 1.122677e-21 1.945263e-17 4.322807e-19
46 8081945 8171516 NM_002893 RBBP7 link to infopage 0.768182 1.145203e-21 1.984292e-17 4.313679e-19
47 8081945 7946812 NM_001017 RPS13 link to infopage 0.768045 1.176157e-21 2.037928e-17 4.336016e-19
48 8081945 7924351 NM_004446 EPRS link to infopage 0.768041 1.176916e-21 2.039242e-17 4.248420e-19
49 8081945 7990211 NM_000520 HEXA link to infopage 0.767920 1.205100e-21 2.088077e-17 4.261382e-19
50 8081945 8104166 NM_004168 SDHA link to infopage 0.766833 1.487050e-21 2.576611e-17 5.153223e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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