[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15718	7933164	NM_004966	HNRNPF		heterogeneous nuclear ribonucleoprotein F

Fetching correlation data, please wait...
Getting list of correlations for id 15718.
Getting list of p-values for id 15718.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7933164	8023063	NM_001001937	ATP5A1	0.856654	2.258010e-31	3.912454e-27	3.912454e-27
2	7933164	8064844	NM_002592	PCNA	0.853402	6.573242e-31	1.138946e-26	5.694728e-27
3	7933164	7913571	NM_001102398	HNRNPR	0.850398	1.724466e-30	2.987983e-26	9.959943e-27
4	7933164	8042720	NM_006429	CCT7	0.846917	5.138529e-30	8.903529e-26	2.225882e-26
5	7933164	8049784	NM_002712	PPP1R7	0.839320	5.078881e-29	8.800178e-25	1.760036e-25
6	7933164	8140828	NM_003130	SRI	0.835310	1.622863e-28	2.811935e-24	4.686558e-25
7	7933164	7898328	NM_001114600	C1orf144	0.830739	5.875639e-28	1.018072e-23	1.454389e-24
8	7933164	7955890	NM_031157	HNRNPA1	0.827920	1.275044e-27	2.209268e-23	2.761585e-24
9	7933164	7975976	NM_012111	AHSA1	0.826923	1.670999e-27	2.895341e-23	3.217045e-24
10	7933164	8132070	NM_002047	GARS	0.824336	3.345952e-27	5.797531e-23	5.797531e-24
11	7933164	8001496	NM_007006	NUDT21	0.823860	3.797280e-27	6.579546e-23	5.981406e-24
12	7933164	7924351	NM_004446	EPRS	0.823342	4.355219e-27	7.546288e-23	6.288573e-24
13	7933164	7987869	NM_015497	TMEM87A	0.823009	4.755845e-27	8.240452e-23	6.338809e-24
14	7933164	7996393	NM_001755	CBFB	0.822114	6.019027e-27	1.042917e-22	7.449406e-24
15	7933164	7997230	NM_002811	PSMD7	0.819933	1.062558e-26	1.841094e-22	1.227396e-23
16	7933164	8139706	NM_014302	SEC61G	0.818856	1.403108e-26	2.431165e-22	1.519478e-23
17	7933164	8095048	NM_030917	FIP1L1	0.818734	1.447661e-26	2.508362e-22	1.475507e-23
18	7933164	8009227	NM_002805	PSMC5	0.815394	3.386339e-26	5.867510e-22	3.259728e-23
19	7933164	8110894	NM_017755	NSUN2	0.814906	3.828231e-26	6.633175e-22	3.491145e-23
20	7933164	7993872	NM_003366	UQCRC2	0.814240	4.522844e-26	7.836732e-22	3.918366e-23
21	7933164	8168280	NM_001145408	NONO	0.812176	7.555277e-26	1.309103e-21	6.233823e-23
22	7933164	8150908	NM_017813	IMPAD1	0.811172	9.674278e-26	1.676262e-21	7.619374e-23
23	7933164	7967976	NM_005870	SAP18	0.810901	1.033717e-25	1.791121e-21	7.787483e-23
24	7933164	8104449	NM_012073	CCT5	0.808917	1.676623e-25	2.905085e-21	1.210452e-22
25	7933164	8132580	NM_006555	YKT6	0.807587	2.310988e-25	4.004248e-21	1.601699e-22
26	7933164	8002919	NM_001130089	KARS	0.805908	3.452817e-25	5.982696e-21	2.301037e-22
27	7933164	7942553	NM_014752	SPCS2	0.805864	3.489254e-25	6.045831e-21	2.239197e-22
28	7933164	7936614	NM_003750	EIF3A	0.805091	4.192318e-25	7.264029e-21	2.594296e-22
29	7933164	7959282	NM_194271	RNF34	0.803905	5.547266e-25	9.611749e-21	3.314396e-22
30	7933164	7905099	NM_007259	VPS45	0.803312	6.375648e-25	1.104709e-20	3.682362e-22
31	7933164	8066668	NM_020967	NCOA5	0.803232	6.496854e-25	1.125710e-20	3.631322e-22
32	7933164	8095269	NM_000938	POLR2B	0.802573	7.579332e-25	1.313271e-20	4.103971e-22
33	7933164	8019250	NM_000918	P4HB	0.801442	9.862162e-25	1.708817e-20	5.178233e-22
34	7933164	8151842	NM_015496	KIAA1429	0.801333	1.011427e-24	1.752500e-20	5.154411e-22
35	7933164	8091048	NR_023350	COPB2	0.801096	1.068499e-24	1.851389e-20	5.289682e-22
36	7933164	7928752	NM_014394	GHITM	0.800352	1.269104e-24	2.198977e-20	6.108268e-22
37	7933164	8135576	NM_015641	TES	0.798561	1.913562e-24	3.315629e-20	8.961159e-22
38	7933164	8073192	NM_006003	UQCRFS1	0.798091	2.129920e-24	3.690512e-20	9.711874e-22
39	7933164	8064502	NM_003091	SNRPB	0.797987	2.181087e-24	3.779169e-20	9.690178e-22
40	7933164	8072206	NM_005243	EWSR1	0.797179	2.620479e-24	4.540505e-20	1.135126e-21
41	7933164	8116622	NM_003804	RIPK1	0.796888	2.798353e-24	4.848707e-20	1.182611e-21
42	7933164	8003758	NM_000430	PAFAH1B1	0.796142	3.311755e-24	5.738278e-20	1.366257e-21
43	7933164	7914180	NM_014752	SPCS2	0.795881	3.511722e-24	6.084760e-20	1.415061e-21
44	7933164	8046604	NM_003659	AGPS	0.795665	3.686926e-24	6.388336e-20	1.451895e-21
45	7933164	8103859	NM_001012732	DCTD	0.795057	4.224764e-24	7.320249e-20	1.626722e-21
46	7933164	8101324	NM_031370	HNRNPD	0.795038	4.242722e-24	7.351365e-20	1.598123e-21
47	7933164	8148333	NM_015137	EFR3A	0.794260	5.047787e-24	8.746300e-20	1.860915e-21
48	7933164	8075798	NM_003753	EIF3D	0.794050	5.290154e-24	9.166250e-20	1.909635e-21
49	7933164	8137596	NM_014671	UBE3C	0.793967	5.388430e-24	9.336533e-20	1.905415e-21
50	7933164	8138773	NM_022170	EIF4H	0.793173	6.427271e-24	1.113653e-19	2.227306e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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