[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11690	8140828	NM_003130	SRI		sorcin

Fetching correlation data, please wait...
Getting list of correlations for id 11690.
Getting list of p-values for id 11690.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.162 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8140828	8139706	NM_014302	SEC61G	0.862036	3.629656e-32	6.289105e-28	6.289105e-28
2	8140828	7928752	NM_014394	GHITM	0.848666	2.978632e-30	5.161076e-26	2.580538e-26
3	8140828	7959282	NM_194271	RNF34	0.839432	4.914489e-29	8.515334e-25	2.838445e-25
4	8140828	8132580	NM_006555	YKT6	0.839315	5.085640e-29	8.811888e-25	2.202972e-25
5	8140828	8139421	NM_012412	H2AFV	0.839207	5.249080e-29	9.095080e-25	1.819016e-25
6	8140828	7980463	NM_012245	SNW1	0.838571	6.324019e-29	1.095763e-24	1.826271e-25
7	8140828	7933164	NM_004966	HNRNPF	0.835310	1.622863e-28	2.811935e-24	4.017050e-25
8	8140828	7897404	NM_007262	PARK7	0.833795	2.496503e-28	4.325690e-24	5.407113e-25
9	8140828	7975976	NM_012111	AHSA1	0.831263	5.080022e-28	8.802154e-24	9.780171e-25
10	8140828	8020241	NM_020232	PSMG2	0.828513	1.084704e-27	1.879467e-23	1.879467e-24
11	8140828	8104449	NM_012073	CCT5	0.826496	1.875335e-27	3.249393e-23	2.953993e-24
12	8140828	8001185	NM_005880	DNAJA2	0.825587	2.394851e-27	4.149558e-23	3.457965e-24
13	8140828	8064844	NM_002592	PCNA	0.823271	4.437272e-27	7.688460e-23	5.914200e-24
14	8140828	8046604	NM_003659	AGPS	0.820547	9.063319e-27	1.570401e-22	1.121715e-23
15	8140828	7950644	NM_004549	NDUFC2	0.820497	9.181860e-27	1.590941e-22	1.060627e-23
16	8140828	8132070	NM_002047	GARS	0.820388	9.443302e-27	1.636241e-22	1.022651e-23
17	8140828	8019762			0.819975	1.051259e-26	1.821517e-22	1.071480e-23
18	8140828	7916372	NM_004872	TMEM59	0.818402	1.576647e-26	2.731855e-22	1.517697e-23
19	8140828	8130952	NM_002793	PSMB1	0.816470	2.580230e-26	4.470765e-22	2.353034e-23
20	8140828	7968297	NM_015932	POMP	0.813145	5.943182e-26	1.029775e-21	5.148876e-23
21	8140828	8116622	NM_003804	RIPK1	0.812223	7.468193e-26	1.294014e-21	6.161970e-23
22	8140828	7977657	NM_031314	HNRNPC	0.811836	8.215876e-26	1.423565e-21	6.470750e-23
23	8140828	8064502	NM_003091	SNRPB	0.810609	1.110504e-25	1.924170e-21	8.365958e-23
24	8140828	8122705	NM_005389	PCMT1	0.810300	1.197674e-25	2.075211e-21	8.646711e-23
25	8140828	8091048	NR_023350	COPB2	0.810073	1.265729e-25	2.193129e-21	8.772515e-23
26	8140828	8023063	NM_001001937	ATP5A1	0.808320	1.936815e-25	3.355919e-21	1.290738e-22
27	8140828	8002919	NM_001130089	KARS	0.807812	2.188897e-25	3.792701e-21	1.404704e-22
28	8140828	8020058	NM_021074	NDUFV2	0.807493	2.363409e-25	4.095078e-21	1.462528e-22
29	8140828	7918813	NM_002524	NRAS	0.805965	3.406541e-25	5.902514e-21	2.035350e-22
30	8140828	8164067	NM_002799	PSMB7	0.805528	3.779344e-25	6.548470e-21	2.182823e-22
31	8140828	7955890	NM_031157	HNRNPA1	0.805520	3.787092e-25	6.561894e-21	2.116740e-22
32	8140828	8148333	NM_015137	EFR3A	0.805078	4.205574e-25	7.286998e-21	2.277187e-22
33	8140828	7940688	NM_002696	POLR2G	0.804462	4.864380e-25	8.428510e-21	2.554094e-22
34	8140828	7920492	NM_001098616	C1orf43	0.803093	6.711783e-25	1.162951e-20	3.420443e-22
35	8140828	8095048	NM_030917	FIP1L1	0.803068	6.751820e-25	1.169888e-20	3.342537e-22
36	8140828	7997230	NM_002811	PSMD7	0.803023	6.821993e-25	1.182047e-20	3.283463e-22
37	8140828	7970546	NM_152726	EFHA1	0.802886	7.044737e-25	1.220642e-20	3.299031e-22
38	8140828	7978570	NM_021249	SNX6	0.802202	8.264685e-25	1.432022e-20	3.768479e-22
39	8140828	7978201	NM_006156	NEDD8	0.802095	8.472570e-25	1.468042e-20	3.764211e-22
40	8140828	8003758	NM_000430	PAFAH1B1	0.801504	9.720958e-25	1.684350e-20	4.210876e-22
41	8140828	8009227	NM_002805	PSMC5	0.800530	1.217959e-24	2.110358e-20	5.147214e-22
42	8140828	7897737	NM_198545	C1orf187	-0.800499	1.226542e-24	2.125230e-20	5.060071e-22
43	8140828	7915758	NM_021639	GPBP1L1	0.799313	1.611141e-24	2.791623e-20	6.492147e-22
44	8140828	8048195	NM_000998	RPL37A	0.798272	2.043999e-24	3.541638e-20	8.049177e-22
45	8140828	8073192	NM_006003	UQCRFS1	0.798250	2.054528e-24	3.559880e-20	7.910844e-22
46	8140828	7942553	NM_014752	SPCS2	0.797082	2.678649e-24	4.641295e-20	1.008977e-21
47	8140828	8135576	NM_015641	TES	0.796728	2.901354e-24	5.027176e-20	1.069612e-21
48	8140828	7936683	NM_001033925	TIAL1	0.796720	2.906850e-24	5.036700e-20	1.049312e-21
49	8140828	8043820	NM_014044	UNC50	0.796336	3.169758e-24	5.492240e-20	1.120865e-21
50	8140828	7918345	NM_002790	PSMA5	0.795491	3.833828e-24	6.642874e-20	1.328575e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation