[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14973	8009227	NM_002805	PSMC5		proteasome (prosome, macropain) 26S subunit, ATPase, 5

Fetching correlation data, please wait...
Getting list of correlations for id 14973.
Getting list of p-values for id 14973.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8009227	8028514	NM_013234	EIF3K	0.860746	5.664481e-32	9.814846e-28	9.814846e-28
2	8009227	8064502	NM_003091	SNRPB	0.857447	1.732940e-31	3.002665e-27	1.501333e-27
3	8009227	8042720	NM_006429	CCT7	0.844598	1.047284e-29	1.814629e-25	6.048764e-26
4	8009227	7897404	NM_007262	PARK7	0.835594	1.495990e-28	2.592101e-24	6.480253e-25
5	8009227	7978201	NM_006156	NEDD8	0.834208	2.220737e-28	3.847870e-24	7.695741e-25
6	8009227	7899737	NM_003757	EIF3I	0.831176	5.205085e-28	9.018852e-24	1.503142e-24
7	8009227	8116020	NM_006816	LMAN2	0.828009	1.244631e-27	2.156572e-23	3.080817e-24
8	8009227	8049784	NM_002712	PPP1R7	0.824994	2.807344e-27	4.864286e-23	6.080357e-24
9	8009227	7940688	NM_002696	POLR2G	0.823150	4.582234e-27	7.939637e-23	8.821818e-24
10	8009227	8139706	NM_014302	SEC61G	0.821635	6.824393e-27	1.182463e-22	1.182463e-23
11	8009227	8169659	NM_004541	NDUFA1	0.820200	9.915521e-27	1.718062e-22	1.561875e-23
12	8009227	8148270	NM_005005	NDUFB9	0.819805	1.098528e-26	1.903419e-22	1.586183e-23
13	8009227	8020058	NM_021074	NDUFV2	0.818893	1.389926e-26	2.408324e-22	1.852557e-23
14	8009227	7933164	NM_004966	HNRNPF	0.815394	3.386339e-26	5.867510e-22	4.191078e-23
15	8009227	8039068	NM_021074	NDUFV2	0.814712	4.018746e-26	6.963281e-22	4.642188e-23
16	8009227	8043100	NM_021103	TMSB10	0.813863	4.969742e-26	8.611072e-22	5.381920e-23
17	8009227	8049180	NM_004846	EIF4E2	0.813542	5.383200e-26	9.327471e-22	5.486748e-23
18	8009227	7975976	NM_012111	AHSA1	0.812741	6.569192e-26	1.138244e-21	6.323577e-23
19	8009227	7911559	NM_017971	MRPL20	0.812155	7.594270e-26	1.315859e-21	6.925574e-23
20	8009227	8039939	NM_017971	MRPL20	0.812155	7.594270e-26	1.315859e-21	6.579296e-23
21	8009227	7989619	NM_000942	PPIB	0.811837	8.212893e-26	1.423048e-21	6.776419e-23
22	8009227	8019046	NM_014740	EIF4A3	0.806986	2.669124e-25	4.624791e-21	2.102178e-22
23	8009227	8023063	NM_001001937	ATP5A1	0.805755	3.580659e-25	6.204208e-21	2.697482e-22
24	8009227	8136631	NM_003143	SSBP1	0.801869	8.931290e-25	1.547525e-20	6.448020e-22
25	8009227	8140828	NM_003130	SRI	0.800530	1.217959e-24	2.110358e-20	8.441432e-22
26	8009227	8104298	NM_004553	NDUFS6	0.799327	1.606102e-24	2.782892e-20	1.070343e-21
27	8009227	8165309	NM_003792	EDF1	0.799060	1.707474e-24	2.958539e-20	1.095755e-21
28	8009227	7942586	NM_001005	RPS3	0.799022	1.722530e-24	2.984627e-20	1.065938e-21
29	8009227	8015712	NM_001040431	CCDC56	0.798161	2.096336e-24	3.632322e-20	1.252525e-21
30	8009227	8139421	NM_012412	H2AFV	0.797758	2.297776e-24	3.981357e-20	1.327119e-21
31	8009227	8048195	NM_000998	RPL37A	0.797038	2.705455e-24	4.687741e-20	1.512175e-21
32	8009227	8073645	NM_015380	SAMM50	0.794958	4.320096e-24	7.485431e-20	2.339197e-21
33	8009227	8001782	NM_002954	RPS27A	0.793914	5.452496e-24	9.447540e-20	2.862891e-21
34	8009227	8172154	NM_002952	RPS2	0.793754	5.650129e-24	9.789978e-20	2.879405e-21
35	8009227	7941709	NM_002896	RBM4	0.793096	6.537006e-24	1.132667e-19	3.236192e-21
36	8009227	7912670	NM_006004	UQCRH	0.791648	8.997474e-24	1.558992e-19	4.330534e-21
37	8009227	8013348	NM_002952	RPS2	0.787430	2.248376e-23	3.895761e-19	1.052908e-20
38	8009227	8075585	NM_014306	C22orf28	0.787199	2.362861e-23	4.094129e-19	1.077402e-20
39	8009227	7995069	NM_004960	FUS	0.787041	2.444197e-23	4.235060e-19	1.085913e-20
40	8009227	8030007	NM_001425	EMP3	0.786752	2.600280e-23	4.505506e-19	1.126376e-20
41	8009227	7963911	NM_001780	CD63	0.785847	3.154406e-23	5.465639e-19	1.333083e-20
42	8009227	7955890	NM_031157	HNRNPA1	0.785376	3.485958e-23	6.040119e-19	1.438124e-20
43	8009227	8074969	NM_001355	DDT	0.784349	4.333495e-23	7.508647e-19	1.746197e-20
44	8009227	7964466	NM_006400	DCTN2	0.784247	4.427468e-23	7.671474e-19	1.743517e-20
45	8009227	8018600	NM_014230	SRP68	0.782500	6.391398e-23	1.107437e-18	2.460972e-20
46	8009227	7959282	NM_194271	RNF34	0.781948	7.172412e-23	1.242764e-18	2.701661e-20
47	8009227	8042052	NM_002954	RPS27A	0.780317	1.006157e-22	1.743367e-18	3.709292e-20
48	8009227	7920271	NM_019554	S100A4	0.778580	1.438607e-22	2.492675e-18	5.193073e-20
49	8009227	7975645	NM_021188	ZNF410	0.778516	1.457657e-22	2.525683e-18	5.154455e-20
50	8009227	8134699	NM_006833	COPS6	0.778076	1.594946e-22	2.763563e-18	5.527127e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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