[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14295.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14295	8169659	NM_004541	NDUFA1		NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa

Fetching correlation data, please wait...
Getting list of correlations for id 14295.
Getting list of p-values for id 14295.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8169659	7897404	NM_007262	PARK7	0.876892	1.520999e-34	2.635434e-30	2.635434e-30
2	8169659	7920271	NM_019554	S100A4	0.868244	3.994115e-33	6.920603e-29	3.460302e-29
3	8169659	7940688	NM_002696	POLR2G	0.867495	5.244672e-33	9.087444e-29	3.029148e-29
4	8169659	7963911	NM_001780	CD63	0.858515	1.210216e-31	2.096941e-27	5.242352e-28
5	8169659	8116020	NM_006816	LMAN2	0.852993	7.504827e-31	1.300361e-26	2.600723e-27
6	8169659	8064502	NM_003091	SNRPB	0.847437	4.372967e-30	7.577039e-26	1.262840e-26
7	8169659	8115158	NM_001025071	RPS14	0.845034	9.169354e-30	1.588774e-25	2.269677e-26
8	8169659	7956211	NM_021019	MYL6	0.842418	2.024875e-29	3.508501e-25	4.385626e-26
9	8169659	7930304	NM_004832	GSTO1	0.841403	2.742571e-29	4.752052e-25	5.280058e-26
10	8169659	8001782	NM_002954	RPS27A	0.839955	4.212420e-29	7.298859e-25	7.298859e-26
11	8169659	7939068	NM_001028	RPS25	0.826228	2.016296e-27	3.493637e-23	3.176033e-24
12	8169659	8134552	NM_005720	ARPC1B	0.825594	2.390498e-27	4.142015e-23	3.451679e-24
13	8169659	7978201	NM_006156	NEDD8	0.822199	5.886031e-27	1.019873e-22	7.845174e-24
14	8169659	8139706	NM_014302	SEC61G	0.820685	8.742469e-27	1.514808e-22	1.082005e-23
15	8169659	8009227	NM_002805	PSMC5	0.820200	9.915521e-27	1.718062e-22	1.145375e-23
16	8169659	7955768	NM_002624	PFDN5	0.816637	2.473091e-26	4.285125e-22	2.678203e-23
17	8169659	7968297	NM_015932	POMP	0.816434	2.603717e-26	4.511461e-22	2.653800e-23
18	8169659	8122136	NM_001016	RPS12	0.815951	2.942259e-26	5.098053e-22	2.832252e-23
19	8169659	8042052	NM_002954	RPS27A	0.813382	5.602042e-26	9.706659e-22	5.108768e-23
20	8169659	8089249	NM_000986	RPL24	0.812967	6.211736e-26	1.076307e-21	5.381537e-23
21	8169659	8002133	NM_002801	PSMB10	0.811181	9.651453e-26	1.672307e-21	7.963368e-23
22	8169659	8136602	NM_004546	NDUFB2	0.809840	1.339612e-25	2.321146e-21	1.055066e-22
23	8169659	8043718	NM_001862	COX5B	0.806875	2.741123e-25	4.749543e-21	2.065019e-22
24	8169659	7983360	NM_004048	B2M	0.803543	6.039913e-25	1.046536e-20	4.360565e-22
25	8169659	8028514	NM_013234	EIF3K	0.801374	1.001949e-24	1.736077e-20	6.944309e-22
26	8169659	8109750	NM_001002	RPLP0	0.800045	1.362037e-24	2.360002e-20	9.076930e-22
27	8169659	8160587	NM_002493	NDUFB6	0.799750	1.457588e-24	2.525562e-20	9.353933e-22
28	8169659	8122705	NM_005389	PCMT1	0.799393	1.581855e-24	2.740880e-20	9.788856e-22
29	8169659	8039796	NM_014453	CHMP2A	0.797045	2.700886e-24	4.679825e-20	1.613733e-21
30	8169659	7977657	NM_031314	HNRNPC	0.796661	2.945771e-24	5.104138e-20	1.701379e-21
31	8169659	7905571	NM_002965	S100A9	0.793604	5.841105e-24	1.012088e-19	3.264801e-21
32	8169659	8140828	NM_003130	SRI	0.793482	6.002000e-24	1.039967e-19	3.249896e-21
33	8169659	8178598	NM_001288	CLIC1	0.792658	7.202992e-24	1.248062e-19	3.782007e-21
34	8169659	7916372	NM_004872	TMEM59	0.791562	9.168852e-24	1.588687e-19	4.672609e-21
35	8169659	7908407	NM_002954	RPS27A	0.791195	9.937535e-24	1.721877e-19	4.919647e-21
36	8169659	8179827	NM_001288	CLIC1	0.790969	1.044100e-23	1.809111e-19	5.025309e-21
37	8169659	8165309	NM_003792	EDF1	0.790409	1.180118e-23	2.044790e-19	5.526460e-21
38	8169659	8063903	NM_001024	RPS21	0.787099	2.413933e-23	4.182622e-19	1.100690e-20
39	8169659	7928752	NM_014394	GHITM	0.786317	2.853634e-23	4.944491e-19	1.267818e-20
40	8169659	8074969	NM_001355	DDT	0.784211	4.461052e-23	7.729665e-19	1.932416e-20
41	8169659	8114618	NM_002488	NDUFA2	0.781552	7.788988e-23	1.349598e-18	3.291702e-20
42	8169659	8067382	NM_002792	PSMA7	0.780262	1.017696e-22	1.763362e-18	4.198482e-20
43	8169659	8043100	NM_021103	TMSB10	0.779746	1.132185e-22	1.961737e-18	4.562179e-20
44	8169659	7959078	GENSCAN00000059320		0.778610	1.429855e-22	2.477510e-18	5.630704e-20
45	8169659	7973564	NM_176783	PSME1	0.777522	1.786024e-22	3.094644e-18	6.876986e-20
46	8169659	8125059	NM_001288	CLIC1	0.776729	2.098303e-22	3.635729e-18	7.903758e-20
47	8169659	8038792	NM_001985	ETFB	0.775928	2.467731e-22	4.275837e-18	9.097525e-20
48	8169659	8142878	NM_139286	CDC26	0.775889	2.487532e-22	4.310146e-18	8.979471e-20
49	8169659	8049180	NM_004846	EIF4E2	0.775851	2.506380e-22	4.342805e-18	8.862868e-20
50	8169659	7994756	NM_002720	PPP4C	0.775772	2.546930e-22	4.413065e-18	8.826130e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation