[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16813	7956211	NM_021019	MYL6		myosin, light chain 6, alkali, smooth muscle and non-muscle

Fetching correlation data, please wait...
Getting list of correlations for id 16813.
Getting list of p-values for id 16813.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7956211	8179827	NM_001288	CLIC1	0.881087	2.849098e-35	4.936631e-31	4.936631e-31
2	7956211	8178598	NM_001288	CLIC1	0.878437	8.267423e-35	1.432496e-30	7.162482e-31
3	7956211	7955768	NM_002624	PFDN5	0.876719	1.627514e-34	2.819993e-30	9.399978e-31
4	7956211	8125059	NM_001288	CLIC1	0.864581	1.488537e-32	2.579187e-28	6.447968e-29
5	7956211	8169659	NM_004541	NDUFA1	0.842418	2.024875e-29	3.508501e-25	7.017001e-26
6	7956211	8036710	NM_004877	GMFG	0.801111	1.064951e-24	1.845241e-20	3.075402e-21
7	7956211	7897404	NM_007262	PARK7	0.794503	4.782253e-24	8.286210e-20	1.183744e-20
8	7956211	7983360	NM_004048	B2M	0.789868	1.327508e-23	2.300174e-19	2.875217e-20
9	7956211	8106776	NM_001867	COX7C	0.787775	2.088031e-23	3.617932e-19	4.019924e-20
10	7956211	7920244	NM_002964	S100A8	0.777635	1.745274e-22	3.024036e-18	3.024036e-19
11	7956211	7917906	NM_000971	RPL7	0.774364	3.380810e-22	5.857929e-18	5.325390e-19
12	7956211	7920271	NM_019554	S100A4	0.772282	5.120740e-22	8.872706e-18	7.393922e-19
13	7956211	8067382	NM_002792	PSMA7	0.767760	1.242963e-21	2.153682e-17	1.656679e-18
14	7956211	7916372	NM_004872	TMEM59	0.765278	2.005225e-21	3.474454e-17	2.481753e-18
15	7956211	7905571	NM_002965	S100A9	0.757856	8.097106e-21	1.402985e-16	9.353237e-18
16	7956211	7963911	NM_001780	CD63	0.757773	8.222296e-21	1.424677e-16	8.904233e-18
17	7956211	8101945	NM_002106	H2AFZ	0.757347	8.893295e-21	1.540941e-16	9.064360e-18
18	7956211	8163185	NM_003329	TXN	0.756003	1.138237e-20	1.972223e-16	1.095680e-17
19	7956211	7979864	NM_004450	ERH	0.754344	1.540202e-20	2.668707e-16	1.404583e-17
20	7956211	8109222	NM_000971	RPL7	0.752988	1.968612e-20	3.411014e-16	1.705507e-17
21	7956211	7983173	NM_012142	CCNDBP1	0.751268	2.681386e-20	4.646037e-16	2.212399e-17
22	7956211	7936871	NM_000274	OAT	0.750625	3.008187e-20	5.212285e-16	2.369221e-17
23	7956211	7978201	NM_006156	NEDD8	0.747072	5.639912e-20	9.772275e-16	4.248815e-17
24	7956211	7988031	NM_001006	RPS3A	0.745792	7.054041e-20	1.222254e-15	5.092724e-17
25	7956211	8035829	NM_000995	RPL34	0.745257	7.742844e-20	1.341603e-15	5.366410e-17
26	7956211	7930304	NM_004832	GSTO1	0.744423	8.949853e-20	1.550741e-15	5.964389e-17
27	7956211	7977657	NM_031314	HNRNPC	0.744152	9.380475e-20	1.625355e-15	6.019833e-17
28	7956211	8151376	NM_000971	RPL7	0.735118	4.338095e-19	7.516617e-15	2.684506e-16
29	7956211	8012469	NM_000987	RPL26	0.734476	4.825714e-19	8.361515e-15	2.883281e-16
30	7956211	8116020	NM_006816	LMAN2	0.734410	4.878634e-19	8.453208e-15	2.817736e-16
31	7956211	8134589	NM_003910	BUD31	0.732343	6.858261e-19	1.188331e-14	3.833325e-16
32	7956211	8134552	NM_005720	ARPC1B	0.731858	7.424877e-19	1.286508e-14	4.020339e-16
33	7956211	8097782	NM_001006	RPS3A	0.731367	8.045000e-19	1.393957e-14	4.224113e-16
34	7956211	8010050	NM_182565	FAM100B	0.730456	9.332737e-19	1.617083e-14	4.756127e-16
35	7956211	8127526	NM_001000	RPL39	0.729121	1.158931e-18	2.008080e-14	5.737372e-16
36	7956211	8114618	NM_002488	NDUFA2	0.728891	1.202834e-18	2.084150e-14	5.789306e-16
37	7956211	7959153	NM_004373	COX6A1	0.728415	1.298799e-18	2.250429e-14	6.082240e-16
38	7956211	8174710	NM_001000	RPL39	0.725825	1.966932e-18	3.408103e-14	8.968693e-16
39	7956211	8025500	NM_024292	UBL5	0.725413	2.100261e-18	3.639122e-14	9.331083e-16
40	7956211	8141222	NM_001006	RPS3A	0.724227	2.534699e-18	4.391874e-14	1.097968e-15
41	7956211	8050695	NM_016047	SF3B14	0.722179	3.500034e-18	6.064509e-14	1.479149e-15
42	7956211	8043718	NM_001862	COX5B	0.719795	5.076374e-18	8.795833e-14	2.094246e-15
43	7956211	7917472	NM_001514	GTF2B	0.719458	5.349054e-18	9.268305e-14	2.155420e-15
44	7956211	7974587	NM_018477	ACTR10	0.718641	6.068902e-18	1.051559e-13	2.389906e-15
45	7956211	8160587	NM_002493	NDUFB6	0.717610	7.114284e-18	1.232692e-13	2.739316e-15
46	7956211	8103222	GENSCAN00000040988		0.716914	7.915970e-18	1.371600e-13	2.981740e-15
47	7956211	8122136	NM_001016	RPS12	0.715805	9.378568e-18	1.625024e-13	3.457499e-15
48	7956211	8122705	NM_005389	PCMT1	0.715005	1.059444e-17	1.835699e-13	3.824373e-15
49	7956211	8075691	NM_021104	RPL41	0.713651	1.300873e-17	2.254022e-13	4.600045e-15
50	7956211	8141050	NM_001006	RPS3A	0.711311	1.849521e-17	3.204664e-13	6.409328e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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