[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15479	8151376	NM_000971	RPL7		ribosomal protein L7
15675	7917906	NM_000971	RPL7		ribosomal protein L7
15804	8109222	NM_000971	RPL7		ribosomal protein L7

Fetching correlation data, please wait...
Getting list of correlations for id 15479.
Getting list of p-values for id 15479.
1 of 3 done.
Getting list of correlations for id 15675.
Getting list of p-values for id 15675.
2 of 3 done.
Getting list of correlations for id 15804.
Getting list of p-values for id 15804.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.350 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8109222	7917906	NM_000971	RPL7	0.993231	3.952781e-98	2.054695e-93	2.054695e-93
2	7917906	8109222	NM_000971	RPL7	0.993231	3.952781e-98	2.054695e-93	1.027348e-93
3	7917906	8151376	NM_000971	RPL7	0.991412	7.945859e-93	4.130337e-88	1.376779e-88
4	8151376	7917906	NM_000971	RPL7	0.991412	7.945859e-93	4.130337e-88	1.032584e-88
5	8109222	8151376	NM_000971	RPL7	0.985965	6.732160e-82	3.499444e-77	6.998888e-78
6	8151376	8109222	NM_000971	RPL7	0.985965	6.732160e-82	3.499444e-77	5.832407e-78
7	8151376	8141050	NM_001006	RPS3A	0.936514	1.101470e-48	5.725552e-44	8.179359e-45
8	7917906	7988031	NM_001006	RPS3A	0.935256	2.928641e-48	1.522337e-43	1.902921e-44
9	8109222	7988031	NM_001006	RPS3A	0.931947	3.506887e-47	1.822915e-42	2.025461e-43
10	8151376	8097782	NM_001006	RPS3A	0.930902	7.483761e-47	3.890134e-42	3.890134e-43
11	7917906	8097782	NM_001006	RPS3A	0.930203	1.234656e-46	6.417865e-42	5.834423e-43
12	8151376	8141222	NM_001006	RPS3A	0.930174	1.260303e-46	6.551183e-42	5.459319e-43
13	7917906	8141222	NM_001006	RPS3A	0.928519	4.035354e-46	2.097618e-41	1.613552e-42
14	7917906	8141050	NM_001006	RPS3A	0.928514	4.047952e-46	2.104166e-41	1.502976e-42
15	8151376	7988031	NM_001006	RPS3A	0.926973	1.167509e-45	6.068827e-41	4.045884e-42
16	8109222	8141050	NM_001006	RPS3A	0.924331	6.800866e-45	3.535158e-40	2.209474e-41
17	8151376	8103222	GENSCAN00000040988		0.923770	9.809954e-45	5.099312e-40	2.999595e-41
18	8109222	8097782	NM_001006	RPS3A	0.922387	2.388636e-44	1.241637e-39	6.897982e-41
19	8109222	8141222	NM_001006	RPS3A	0.921903	3.250186e-44	1.689479e-39	8.891997e-41
20	7917906	8103222	GENSCAN00000040988		0.921191	5.092307e-44	2.647032e-39	1.323516e-40
21	8109222	8103222	GENSCAN00000040988		0.911508	1.549694e-41	8.055465e-37	3.835936e-38
22	8109222	7990916	NM_001021	RPS17	0.891788	2.932793e-37	1.524495e-32	6.929524e-34
23	8109222	7990965	NM_001021	RPS17	0.891788	2.932793e-37	1.524495e-32	6.628240e-34
24	7917906	7990965	NM_001021	RPS17	0.890422	5.398641e-37	2.806268e-32	1.169278e-33
25	7917906	7990916	NM_001021	RPS17	0.890422	5.398641e-37	2.806268e-32	1.122507e-33
26	7917906	8012469	NM_000987	RPL26	0.887899	1.632485e-36	8.485822e-32	3.263778e-33
27	8109222	8012469	NM_000987	RPL26	0.887017	2.387935e-36	1.241272e-31	4.597305e-33
28	8109222	7946807	NM_021029	RPL36A	0.885887	3.870314e-36	2.011828e-31	7.185100e-33
29	8109222	8035829	NM_000995	RPL34	0.883680	9.795774e-36	5.091941e-31	1.755842e-32
30	7917906	7946807	NM_021029	RPL36A	0.883185	1.203633e-35	6.256604e-31	2.085535e-32
31	7917906	8035829	NM_000995	RPL34	0.882928	1.338341e-35	6.956831e-31	2.244139e-32
32	8109222	8168843	NM_021029	RPL36A	0.880531	3.570331e-35	1.855894e-30	5.799668e-32
33	8151376	7990916	NM_001021	RPS17	0.879934	4.542668e-35	2.361324e-30	7.155528e-32
34	8151376	7990965	NM_001021	RPS17	0.879934	4.542668e-35	2.361324e-30	6.945071e-32
35	8151376	8012469	NM_000987	RPL26	0.879509	5.388327e-35	2.800906e-30	8.002589e-32
36	7917906	8168843	NM_021029	RPL36A	0.874995	3.180007e-34	1.653000e-29	4.591666e-31
37	8109222	7954243	ENST00000449390		0.874609	3.690496e-34	1.918357e-29	5.184749e-31
38	8151376	7902448	NM_001035006	RPL17	0.874379	4.030000e-34	2.094834e-29	5.512722e-31
39	8109222	7902448	NM_001035006	RPL17	0.872833	7.264400e-34	3.776108e-29	9.682328e-31
40	8151376	8099887	NM_001024921	RPL9	0.867817	4.666170e-33	2.425522e-28	6.063804e-30
41	7917906	7954243	ENST00000449390		0.866959	6.365680e-33	3.308944e-28	8.070595e-30
42	8151376	7990898	NM_000661	RPL9	0.866893	6.517872e-33	3.388055e-28	8.066797e-30
43	8151376	7990949	NM_000661	RPL9	0.866072	8.754027e-33	4.550431e-28	1.058240e-29
44	7917906	7990898	NM_000661	RPL9	0.865651	1.017773e-32	5.290488e-28	1.202384e-29
45	8151376	8171834	NM_000661	RPL9	0.865563	1.050117e-32	5.458615e-28	1.213026e-29
46	7917906	8099887	NM_001024921	RPL9	0.865561	1.050998e-32	5.463191e-28	1.187650e-29
47	7917906	8171834	NM_000661	RPL9	0.864976	1.293804e-32	6.725322e-28	1.430920e-29
48	8151376	7903582	NM_001035006	RPL17	0.864097	1.765608e-32	9.177805e-28	1.912043e-29
49	7917906	7990949	NM_000661	RPL9	0.864022	1.813221e-32	9.425306e-28	1.923532e-29
50	7917906	7902448	NM_001035006	RPL17	0.862753	2.828914e-32	1.470498e-27	2.940995e-29

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation