[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16642.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16642	8141222	NM_001006	RPS3A		ribosomal protein S3A

Fetching correlation data, please wait...
Getting list of correlations for id 16642.
Getting list of p-values for id 16642.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8141222	8097782	NM_001006	RPS3A	0.998779	2.193750e-136	3.801111e-132	3.801111e-132
2	8141222	8103222	GENSCAN00000040988		0.980679	8.310593e-75	1.439976e-70	7.199882e-71
3	8141222	7988031	NM_001006	RPS3A	0.974284	1.755397e-68	3.041576e-64	1.013859e-64
4	8141222	8141050	NM_001006	RPS3A	0.961813	8.940035e-60	1.549040e-55	3.872599e-56
5	8141222	8099887	NM_001024921	RPL9	0.961138	2.167700e-59	3.755974e-55	7.511949e-56
6	8141222	7990898	NM_000661	RPL9	0.960066	8.571625e-59	1.485205e-54	2.475342e-55
7	8141222	8171834	NM_000661	RPL9	0.959953	9.877132e-59	1.711411e-54	2.444872e-55
8	8141222	7990949	NM_000661	RPL9	0.958627	5.113960e-58	8.860958e-54	1.107620e-54
9	8141222	8151376	NM_000971	RPL7	0.930174	1.260303e-46	2.183728e-42	2.426364e-43
10	8141222	7917906	NM_000971	RPL7	0.928519	4.035354e-46	6.992058e-42	6.992058e-43
11	8141222	8109222	NM_000971	RPL7	0.921903	3.250186e-44	5.631598e-40	5.119634e-41
12	8141222	7902448	NM_001035006	RPL17	0.883634	9.986462e-36	1.730354e-31	1.441962e-32
13	8141222	7903582	NM_001035006	RPL17	0.869904	2.172417e-33	3.764148e-29	2.895498e-30
14	8141222	7999827	NM_001019	RPS15A	0.869671	2.367652e-33	4.102430e-29	2.930307e-30
15	8141222	7990965	NM_001021	RPS17	0.868554	3.566931e-33	6.180421e-29	4.120281e-30
16	8141222	7990916	NM_001021	RPS17	0.868554	3.566931e-33	6.180421e-29	3.862763e-30
17	8141222	8174710	NM_001000	RPL39	0.853607	6.149202e-31	1.065472e-26	6.267484e-28
18	8141222	8127526	NM_001000	RPL39	0.852776	8.051101e-31	1.395014e-26	7.750079e-28
19	8141222	8158952	NM_001402	EEF1A1	0.842525	1.960515e-29	3.396985e-25	1.787887e-26
20	8141222	8138531	NM_001402	EEF1A1	0.839526	4.779793e-29	8.281947e-25	4.140973e-26
21	8141222	8040036	NM_001011	RPS7	0.838597	6.275811e-29	1.087410e-24	5.178142e-26
22	8141222	8078248	NM_002128	HMGB1	0.831430	4.849865e-28	8.403362e-24	3.819710e-25
23	8141222	8109750	NM_001002	RPLP0	0.829075	9.299158e-28	1.611265e-23	7.005501e-25
24	8141222	8065325	ENST00000457423		0.822953	4.827052e-27	8.363833e-23	3.484930e-24
25	8141222	7971375	NM_003295	TPT1	0.819529	1.179748e-26	2.044149e-22	8.176597e-24
26	8141222	7954243	ENST00000449390		0.806008	3.371900e-25	5.842492e-21	2.247112e-22
27	8141222	7898875	NM_000975	RPL11	0.802300	8.078167e-25	1.399704e-20	5.184089e-22
28	8141222	8151935	NM_000989	RPL30	0.799955	1.390308e-24	2.408986e-20	8.603522e-22
29	8141222	8078905	NM_002295	RPSA	0.798177	2.088662e-24	3.619025e-20	1.247940e-21
30	8141222	7918050	NM_002295	RPSA	0.797896	2.226989e-24	3.858703e-20	1.286234e-21
31	8141222	8035829	NM_000995	RPL34	0.792713	7.115970e-24	1.232984e-19	3.977368e-21
32	8141222	7946807	NM_021029	RPL36A	0.791490	9.314788e-24	1.613973e-19	5.043667e-21
33	8141222	8125835	NM_001014	RPS10	0.789490	1.441226e-23	2.497212e-19	7.567308e-21
34	8141222	8012469	NM_000987	RPL26	0.786437	2.781180e-23	4.818951e-19	1.417339e-20
35	8141222	8168843	NM_021029	RPL36A	0.785679	3.268772e-23	5.663801e-19	1.618229e-20
36	8141222	7973936	NM_002791	PSMA6	0.783249	5.462948e-23	9.465650e-19	2.629347e-20
37	8141222	7983360	NM_004048	B2M	0.780818	9.070923e-23	1.571719e-18	4.247889e-20
38	8141222	8150870	NM_002806	PSMC6	0.780557	9.574934e-23	1.659049e-18	4.365918e-20
39	8141222	8111099	GENSCAN00000039269		0.774502	3.288790e-22	5.698486e-18	1.461150e-19
40	8141222	7957052	NM_006431	CCT2	0.773073	4.376203e-22	7.582647e-18	1.895662e-19
41	8141222	7923438	NM_001030	RPS27	0.772851	4.573254e-22	7.924077e-18	1.932702e-19
42	8141222	8101718	NM_032906	PIGY	0.772492	4.911419e-22	8.510016e-18	2.026194e-19
43	8141222	8138361	NM_021029	RPL36A	0.768592	1.057513e-21	1.832353e-17	4.261286e-19
44	8141222	8014066	NM_001003927	EVI2A	0.768298	1.119633e-21	1.939988e-17	4.409063e-19
45	8141222	7927267	NM_019054	FAM35A	0.765484	1.927740e-21	3.340194e-17	7.422654e-19
46	8141222	8042259	NM_005917	MDH1	0.764091	2.515476e-21	4.358565e-17	9.475141e-19
47	8141222	8075691	NM_021104	RPL41	0.759027	6.518222e-21	1.129412e-16	2.403005e-18
48	8141222	7988605	NM_004236	COPS2	0.757264	9.030919e-21	1.564787e-16	3.259974e-18
49	8141222	7903183	ENST00000415278		0.756713	9.993078e-21	1.731501e-16	3.533675e-18
50	8141222	7950544	NM_004705	PRKRIR	0.755192	1.319979e-20	2.287127e-16	4.574254e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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