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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 15438.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
15438 8174710 NM_001000 RPL39 link to infopage ribosomal protein L39

Fetching correlation data, please wait...
Getting list of correlations for id 15438.
Getting list of p-values for id 15438.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.103 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8174710 8127526 NM_001000 RPL39 link to infopage 0.999064 2.538826e-142 4.399023e-138 4.399023e-138
2 8174710 7923438 NM_001030 RPS27 link to infopage 0.941456 1.923439e-50 3.332743e-46 1.666372e-46
3 8174710 7999827 NM_001019 RPS15A link to infopage 0.917450 5.039853e-43 8.732554e-39 2.910851e-39
4 8174710 7905691 NM_001030 RPS27 link to infopage 0.916555 8.582111e-43 1.487022e-38 3.717556e-39
5 8174710 8065325 ENST00000457423 link to infopage 0.911290 1.748950e-41 3.030406e-37 6.060811e-38
6 8174710 7990965 NM_001021 RPS17 link to infopage 0.910921 2.145772e-41 3.717980e-37 6.196633e-38
7 8174710 7990916 NM_001021 RPS17 link to infopage 0.910921 2.145772e-41 3.717980e-37 5.311400e-38
8 8174710 8040036 NM_001011 RPS7 link to infopage 0.902288 2.009794e-39 3.482370e-35 4.352963e-36
9 8174710 8079019 NM_001030 RPS27 link to infopage 0.897200 2.404946e-38 4.167050e-34 4.630055e-35
10 8174710 8061364 NM_021104 RPL41 link to infopage 0.895709 4.854984e-38 8.412231e-34 8.412231e-35
11 8174710 8075691 NM_021104 RPL41 link to infopage 0.895547 5.237059e-38 9.074253e-34 8.249321e-35
12 8174710 8105432 NM_021104 RPL41 link to infopage 0.894176 9.889704e-38 1.713589e-33 1.427991e-34
13 8174710 7900157 NM_001030 RPS27 link to infopage 0.892133 2.510775e-37 4.350421e-33 3.346477e-34
14 8174710 8125835 NM_001014 RPS10 link to infopage 0.882690 1.476852e-35 2.558942e-31 1.827815e-32
15 8174710 8151935 NM_000989 RPL30 link to infopage 0.878403 8.378259e-35 1.451701e-30 9.678006e-32
16 8174710 8164100 NM_007209 RPL35 link to infopage 0.866676 7.048440e-33 1.221283e-28 7.633020e-30
17 8174710 7990949 NM_000661 RPL9 link to infopage 0.860847 5.471120e-32 9.479809e-28 5.576358e-29
18 8174710 8171834 NM_000661 RPL9 link to infopage 0.860129 6.996274e-32 1.212244e-27 6.734692e-29
19 8174710 7990898 NM_000661 RPL9 link to infopage 0.859987 7.343741e-32 1.272450e-27 6.697105e-29
20 8174710 8099887 NM_001024921 RPL9 link to infopage 0.859732 8.011174e-32 1.388096e-27 6.940481e-29
21 8174710 8122699 BC071678 RPS18P9 link to infopage 0.855886 2.912791e-31 5.046992e-27 2.403330e-28
22 8174710 8141222 NM_001006 RPS3A link to infopage 0.853607 6.149202e-31 1.065472e-26 4.843056e-28
23 8174710 8097782 NM_001006 RPS3A link to infopage 0.852363 9.198766e-31 1.593870e-26 6.929870e-28
24 8174710 8007441 NM_000988 RPL27 link to infopage 0.851700 1.138428e-30 1.972554e-26 8.218973e-28
25 8174710 7964828 GENSCAN00000052941 link to infopage 0.843629 1.405554e-29 2.435404e-25 9.741615e-27
26 8174710 7918050 NM_002295 RPSA link to infopage 0.842060 2.254193e-29 3.905841e-25 1.502247e-26
27 8174710 8078905 NM_002295 RPSA link to infopage 0.838716 6.061264e-29 1.050235e-24 3.889760e-26
28 8174710 8103222 GENSCAN00000040988 link to infopage 0.838705 6.080664e-29 1.053597e-24 3.762845e-26
29 8174710 7988031 NM_001006 RPS3A link to infopage 0.834287 2.171637e-28 3.762796e-24 1.297516e-25
30 8174710 8089230 GENSCAN00000044426 link to infopage 0.831400 4.890617e-28 8.473973e-24 2.824658e-25
31 8174710 8109750 NM_001002 RPLP0 link to infopage 0.825040 2.772847e-27 4.804512e-23 1.549842e-24
32 8174710 8179544 NM_022551 RPS18 link to infopage 0.824240 3.431988e-27 5.946606e-23 1.858314e-24
33 8174710 8118644 NM_022551 RPS18 link to infopage 0.824240 3.431988e-27 5.946606e-23 1.802002e-24
34 8174710 8178253 NM_022551 RPS18 link to infopage 0.824240 3.431988e-27 5.946606e-23 1.749002e-24
35 8174710 7917906 NM_000971 RPL7 link to infopage 0.818630 1.487001e-26 2.576527e-22 7.361504e-24
36 8174710 8151376 NM_000971 RPL7 link to infopage 0.815829 3.034047e-26 5.257094e-22 1.460304e-23
37 8174710 8141050 NM_001006 RPS3A link to infopage 0.808587 1.816035e-25 3.146644e-21 8.504444e-23
38 8174710 8101718 NM_032906 PIGY link to infopage 0.805571 3.740782e-25 6.481654e-21 1.705698e-22
39 8174710 8109222 NM_000971 RPL7 link to infopage 0.805497 3.807197e-25 6.596730e-21 1.691469e-22
40 8174710 8089249 NM_000986 RPL24 link to infopage 0.804367 4.975206e-25 8.620540e-21 2.155135e-22
41 8174710 8106776 NM_001867 COX7C link to infopage 0.797737 2.308895e-24 4.000623e-20 9.757617e-22
42 8174710 8063903 NM_001024 RPS21 link to infopage 0.796662 2.945510e-24 5.103685e-20 1.215163e-21
43 8174710 7965467 ENST00000358888 link to infopage 0.795858 3.530058e-24 6.116532e-20 1.422449e-21
44 8174710 7982129 ENST00000358888 link to infopage 0.795858 3.530058e-24 6.116532e-20 1.390121e-21
45 8174710 7978824 NM_001030001 RPS29 link to infopage 0.795056 4.225644e-24 7.321773e-20 1.627061e-21
46 8174710 8084945 ENST00000439929 link to infopage 0.791340 9.626770e-24 1.668031e-19 3.626153e-21
47 8174710 8035829 NM_000995 RPL34 link to infopage 0.788208 1.902109e-23 3.295785e-19 7.012308e-21
48 8174710 7946807 NM_021029 RPL36A link to infopage 0.783299 5.405410e-23 9.365954e-19 1.951240e-20
49 8174710 7898875 NM_000975 RPL11 link to infopage 0.781888 7.262775e-23 1.258421e-18 2.568206e-20
50 8174710 8168843 NM_021029 RPL36A link to infopage 0.776222 2.325244e-22 4.028951e-18 8.057902e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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