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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
15302 8164100 NM_007209 RPL35 link to infopage ribosomal protein L35

Fetching correlation data, please wait...
Getting list of correlations for id 15302.
Getting list of p-values for id 15302.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8164100 7918050 NM_002295 RPSA link to infopage 0.885915 3.825529e-36 6.628495e-32 6.628495e-32
2 8164100 8078905 NM_002295 RPSA link to infopage 0.883000 1.299204e-35 2.251131e-31 1.125565e-31
3 8164100 8089230 GENSCAN00000044426 link to infopage 0.880951 3.010773e-35 5.216767e-31 1.738922e-31
4 8164100 8125835 NM_001014 RPS10 link to infopage 0.877448 1.222470e-34 2.118174e-30 5.295435e-31
5 8164100 8127526 NM_001000 RPL39 link to infopage 0.868958 3.076941e-33 5.331416e-29 1.066283e-29
6 8164100 8174710 NM_001000 RPL39 link to infopage 0.866676 7.048440e-33 1.221283e-28 2.035472e-29
7 8164100 8007441 NM_000988 RPL27 link to infopage 0.864792 1.381221e-32 2.393242e-28 3.418917e-29
8 8164100 8063903 NM_001024 RPS21 link to infopage 0.864243 1.677351e-32 2.906346e-28 3.632933e-29
9 8164100 8089249 NM_000986 RPL24 link to infopage 0.863510 2.170865e-32 3.761458e-28 4.179397e-29
10 8164100 8178253 NM_022551 RPS18 link to infopage 0.855309 3.524212e-31 6.106402e-27 6.106402e-28
11 8164100 8179544 NM_022551 RPS18 link to infopage 0.855309 3.524212e-31 6.106402e-27 5.551274e-28
12 8164100 8118644 NM_022551 RPS18 link to infopage 0.855309 3.524212e-31 6.106402e-27 5.088668e-28
13 8164100 8122699 BC071678 RPS18P9 link to infopage 0.853566 6.232285e-31 1.079868e-26 8.306677e-28
14 8164100 8109750 NM_001002 RPLP0 link to infopage 0.852317 9.336786e-31 1.617785e-26 1.155561e-27
15 8164100 8042052 NM_002954 RPS27A link to infopage 0.843534 1.446472e-29 2.506302e-25 1.670868e-26
16 8164100 8001782 NM_002954 RPS27A link to infopage 0.840836 3.245709e-29 5.623841e-25 3.514900e-26
17 8164100 7964828 GENSCAN00000052941 link to infopage 0.839824 4.377842e-29 7.585487e-25 4.462051e-26
18 8164100 7923438 NM_001030 RPS27 link to infopage 0.834094 2.293944e-28 3.974717e-24 2.208176e-25
19 8164100 8076209 NM_000967 RPL3 link to infopage 0.833010 3.116046e-28 5.399173e-24 2.841670e-25
20 8164100 8122136 NM_001016 RPS12 link to infopage 0.832716 3.384268e-28 5.863920e-24 2.931960e-25
21 8164100 8172154 NM_002952 RPS2 link to infopage 0.831130 5.271820e-28 9.134482e-24 4.349753e-25
22 8164100 7990916 NM_001021 RPS17 link to infopage 0.830675 5.982335e-28 1.036559e-23 4.711633e-25
23 8164100 7990965 NM_001021 RPS17 link to infopage 0.830675 5.982335e-28 1.036559e-23 4.506779e-25
24 8164100 7942586 NM_001005 RPS3 link to infopage 0.827908 1.279087e-27 2.216274e-23 9.234477e-25
25 8164100 8036777 NM_001436 FBL link to infopage 0.825745 2.296024e-27 3.978320e-23 1.591328e-24
26 8164100 7908407 NM_002954 RPS27A link to infopage 0.823135 4.600384e-27 7.971085e-23 3.065802e-24
27 8164100 8129095 ENST00000435100 link to infopage 0.821431 7.198151e-27 1.247224e-22 4.619347e-24
28 8164100 7939068 NM_001028 RPS25 link to infopage 0.819828 1.091954e-26 1.892029e-22 6.757245e-24
29 8164100 8043100 NM_021103 TMSB10 link to infopage 0.819653 1.142473e-26 1.979564e-22 6.826082e-24
30 8164100 8086148 NM_000992 RPL29 link to infopage 0.818158 1.678320e-26 2.908025e-22 9.693416e-24
31 8164100 8013348 NM_002952 RPS2 link to infopage 0.815266 3.497077e-26 6.059386e-22 1.954641e-23
32 8164100 8115158 NM_001025071 RPS14 link to infopage 0.813618 5.282414e-26 9.152838e-22 2.860262e-23
33 8164100 7998655 NM_002952 RPS2 link to infopage 0.812646 6.725844e-26 1.165387e-21 3.531476e-23
34 8164100 8031933 NM_001009 RPS5 link to infopage 0.811750 8.390688e-26 1.453855e-21 4.276043e-23
35 8164100 8126450 NM_000986 RPL24 link to infopage 0.810838 1.049785e-25 1.818962e-21 5.197034e-23
36 8164100 8056966 ENST00000405359 link to infopage 0.808462 1.871457e-25 3.242674e-21 9.007426e-23
37 8164100 8036737 NM_001020 RPS16 link to infopage 0.807767 2.213107e-25 3.834651e-21 1.036392e-22
38 8164100 7952056 NM_000732 CD3D link to infopage 0.805361 3.932633e-25 6.814073e-21 1.793177e-22
39 8164100 8030351 NM_012423 RPL13A link to infopage 0.800760 1.154938e-24 2.001162e-20 5.131184e-22
40 8164100 8085026 NM_000996 RPL35A link to infopage 0.800336 1.273624e-24 2.206809e-20 5.517023e-22
41 8164100 7905691 NM_001030 RPS27 link to infopage 0.800176 1.321416e-24 2.289618e-20 5.584433e-22
42 8164100 8160308 NM_001010 RPS6 link to infopage 0.799461 1.557570e-24 2.698802e-20 6.425718e-22
43 8164100 8139758 NM_016139 CHCHD2 link to infopage 0.798498 1.941216e-24 3.363545e-20 7.822198e-22
44 8164100 7911559 NM_017971 MRPL20 link to infopage 0.796844 2.826405e-24 4.897313e-20 1.113026e-21
45 8164100 8039939 NM_017971 MRPL20 link to infopage 0.796844 2.826405e-24 4.897313e-20 1.088292e-21
46 8164100 8028514 NM_013234 EIF3K link to infopage 0.795650 3.699013e-24 6.409279e-20 1.393322e-21
47 8164100 8029958 NM_015710 GLTSCR2 link to infopage 0.795472 3.849803e-24 6.670554e-20 1.419267e-21
48 8164100 8029129 NM_001022 RPS19 link to infopage 0.794738 4.537663e-24 7.862408e-20 1.638002e-21
49 8164100 8130403 ENST00000406898 link to infopage 0.787373 2.276015e-23 3.943652e-19 8.048268e-21
50 8164100 8000323 NM_005003 NDUFAB1 link to infopage 0.787267 2.328794e-23 4.035101e-19 8.070202e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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