[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15819	7990916	NM_001021	RPS17		ribosomal protein S17
15820	7990965	NM_001021	RPS17		ribosomal protein S17

Fetching correlation data, please wait...
Getting list of correlations for id 15819.
Getting list of p-values for id 15819.
1 of 2 done.
Getting list of correlations for id 15820.
Getting list of p-values for id 15820.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.203 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7990916	7990965	NM_001021	RPS17	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7990965	7990916	NM_001021	RPS17	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7990965	8174710	NM_001000	RPL39	0.910921	2.145772e-41	7.435959e-37	2.478653e-37
4	7990916	8174710	NM_001000	RPL39	0.910921	2.145772e-41	7.435959e-37	1.858990e-37
5	7990965	8127526	NM_001000	RPL39	0.910213	3.168041e-41	1.097853e-36	2.195706e-37
6	7990916	8127526	NM_001000	RPL39	0.910213	3.168041e-41	1.097853e-36	1.829755e-37
7	7990916	8151935	NM_000989	RPL30	0.901954	2.375773e-39	8.233003e-35	1.176143e-35
8	7990965	8151935	NM_000989	RPL30	0.901954	2.375773e-39	8.233003e-35	1.029125e-35
9	7990916	8109222	NM_000971	RPL7	0.891788	2.932793e-37	1.016330e-32	1.129256e-33
10	7990965	8109222	NM_000971	RPL7	0.891788	2.932793e-37	1.016330e-32	1.016330e-33
11	7990916	7917906	NM_000971	RPL7	0.890422	5.398641e-37	1.870845e-32	1.700768e-33
12	7990965	7917906	NM_000971	RPL7	0.890422	5.398641e-37	1.870845e-32	1.559038e-33
13	7990965	7923438	NM_001030	RPS27	0.885114	5.371029e-36	1.861276e-31	1.431751e-32
14	7990916	7923438	NM_001030	RPS27	0.885114	5.371029e-36	1.861276e-31	1.329483e-32
15	7990965	8125835	NM_001014	RPS10	0.883822	9.233250e-36	3.199690e-31	2.133127e-32
16	7990916	8125835	NM_001014	RPS10	0.883822	9.233250e-36	3.199690e-31	1.999807e-32
17	7990916	8035829	NM_000995	RPL34	0.881678	2.238279e-35	7.756533e-31	4.562667e-32
18	7990965	8035829	NM_000995	RPL34	0.881678	2.238279e-35	7.756533e-31	4.309185e-32
19	7990916	8151376	NM_000971	RPL7	0.879934	4.542668e-35	1.574216e-30	8.285348e-32
20	7990965	8151376	NM_000971	RPL7	0.879934	4.542668e-35	1.574216e-30	7.871081e-32
21	7990965	7902448	NM_001035006	RPL17	0.878136	9.314048e-35	3.227690e-30	1.536995e-31
22	7990916	7902448	NM_001035006	RPL17	0.878136	9.314048e-35	3.227690e-30	1.467132e-31
23	7990965	7946807	NM_021029	RPL36A	0.870823	1.545022e-33	5.354120e-29	2.327878e-30
24	7990916	7946807	NM_021029	RPL36A	0.870823	1.545022e-33	5.354120e-29	2.230883e-30
25	7990916	8097782	NM_001006	RPS3A	0.869914	2.164736e-33	7.501676e-29	3.000671e-30
26	7990965	8097782	NM_001006	RPS3A	0.869914	2.164736e-33	7.501676e-29	2.885260e-30
27	7990916	8141222	NM_001006	RPS3A	0.868554	3.566931e-33	1.236084e-28	4.578089e-30
28	7990965	8141222	NM_001006	RPS3A	0.868554	3.566931e-33	1.236084e-28	4.414586e-30
29	7990916	8075691	NM_021104	RPL41	0.868304	3.908142e-33	1.354328e-28	4.670095e-30
30	7990965	8075691	NM_021104	RPL41	0.868304	3.908142e-33	1.354328e-28	4.514425e-30
31	7990965	8105432	NM_021104	RPL41	0.865996	8.995910e-33	3.117443e-28	1.005627e-29
32	7990916	8105432	NM_021104	RPL41	0.865996	8.995910e-33	3.117443e-28	9.742008e-30
33	7990916	8168843	NM_021029	RPL36A	0.865328	1.141621e-32	3.956173e-28	1.198840e-29
34	7990965	8168843	NM_021029	RPL36A	0.865328	1.141621e-32	3.956173e-28	1.163580e-29
35	7990916	7988031	NM_001006	RPS3A	0.864903	1.327931e-32	4.601811e-28	1.314803e-29
36	7990965	7988031	NM_001006	RPS3A	0.864903	1.327931e-32	4.601811e-28	1.278281e-29
37	7990916	8061364	NM_021104	RPL41	0.864714	1.419947e-32	4.920684e-28	1.329915e-29
38	7990965	8061364	NM_021104	RPL41	0.864714	1.419947e-32	4.920684e-28	1.294917e-29
39	7990965	7903582	NM_001035006	RPL17	0.860108	7.046367e-32	2.441848e-27	6.261149e-29
40	7990916	7903582	NM_001035006	RPL17	0.860108	7.046367e-32	2.441848e-27	6.104620e-29
41	7990965	8103222	GENSCAN00000040988		0.858756	1.115879e-31	3.866967e-27	9.431628e-29
42	7990916	8103222	GENSCAN00000040988		0.858756	1.115879e-31	3.866967e-27	9.207065e-29
43	7990965	7999827	NM_001019	RPS15A	0.856371	2.480066e-31	8.594421e-27	1.998702e-28
44	7990916	7999827	NM_001019	RPS15A	0.856371	2.480066e-31	8.594421e-27	1.953277e-28
45	7990916	8040036	NM_001011	RPS7	0.853288	6.822485e-31	2.364264e-26	5.253920e-28
46	7990965	8040036	NM_001011	RPS7	0.853288	6.822485e-31	2.364264e-26	5.139704e-28
47	7990965	7905691	NM_001030	RPS27	0.850632	1.600844e-30	5.547564e-26	1.180333e-27
48	7990916	7905691	NM_001030	RPS27	0.850632	1.600844e-30	5.547564e-26	1.155742e-27
49	7990916	8099887	NM_001024921	RPL9	0.847786	3.922485e-30	1.359298e-25	2.774077e-27
50	7990965	8099887	NM_001024921	RPL9	0.847786	3.922485e-30	1.359298e-25	2.718596e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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