[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 11414.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11414	7946807	NM_021029	RPL36A		ribosomal protein L36a

Fetching correlation data, please wait...
Getting list of correlations for id 11414.
Getting list of p-values for id 11414.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7946807	8168843	NM_021029	RPL36A	0.992514	6.914234e-96	1.198029e-91	1.198029e-91
2	7946807	8138361	NM_021029	RPL36A	0.967276	3.614665e-63	6.263130e-59	3.131565e-59
3	7946807	8035829	NM_000995	RPL34	0.891971	2.700164e-37	4.678574e-33	1.559525e-33
4	7946807	8109222	NM_000971	RPL7	0.885887	3.870314e-36	6.706094e-32	1.676523e-32
5	7946807	7917906	NM_000971	RPL7	0.883185	1.203633e-35	2.085535e-31	4.171070e-32
6	7946807	7990965	NM_001021	RPS17	0.870823	1.545022e-33	2.677060e-29	4.461767e-30
7	7946807	7990916	NM_001021	RPS17	0.870823	1.545022e-33	2.677060e-29	3.824371e-30
8	7946807	8151376	NM_000971	RPL7	0.861984	3.694911e-32	6.402173e-28	8.002716e-29
9	7946807	8075691	NM_021104	RPL41	0.813809	5.037546e-26	8.728555e-22	9.698395e-23
10	7946807	8061364	NM_021104	RPL41	0.812514	6.949129e-26	1.204076e-21	1.204076e-22
11	7946807	8012469	NM_000987	RPL26	0.811706	8.482250e-26	1.469719e-21	1.336109e-22
12	7946807	8040036	NM_001011	RPS7	0.810941	1.023813e-25	1.773961e-21	1.478301e-22
13	7946807	8105432	NM_021104	RPL41	0.810412	1.165307e-25	2.019127e-21	1.553175e-22
14	7946807	8131661	NM_000982	RPL21	0.809021	1.634684e-25	2.832418e-21	2.023155e-22
15	7946807	7968226	NM_000982	RPL21	0.808965	1.657255e-25	2.871527e-21	1.914351e-22
16	7946807	7924144	NR_026911	RPL21P28	0.806916	2.714369e-25	4.703186e-21	2.939492e-22
17	7946807	7936727	NM_000982	RPL21	0.806711	2.850821e-25	4.939618e-21	2.905658e-22
18	7946807	8141222	NM_001006	RPS3A	0.791490	9.314788e-24	1.613973e-19	8.966519e-21
19	7946807	8097782	NM_001006	RPS3A	0.790661	1.116916e-23	1.935280e-19	1.018569e-20
20	7946807	7988031	NM_001006	RPS3A	0.789740	1.365001e-23	2.365137e-19	1.182568e-20
21	7946807	8070160	NM_001697	ATP5O	0.786456	2.770198e-23	4.799922e-19	2.285677e-20
22	7946807	7902448	NM_001035006	RPL17	0.785706	3.250172e-23	5.631572e-19	2.559806e-20
23	7946807	7954243	ENST00000449390		0.785432	3.444791e-23	5.968790e-19	2.595126e-20
24	7946807	8127526	NM_001000	RPL39	0.784818	3.924302e-23	6.799638e-19	2.833182e-20
25	7946807	7923438	NM_001030	RPS27	0.784292	4.385895e-23	7.599440e-19	3.039776e-20
26	7946807	7999360	NM_000982	RPL21	0.783789	4.876916e-23	8.450232e-19	3.250089e-20
27	7946807	8106776	NM_001867	COX7C	0.783635	5.037023e-23	8.727649e-19	3.232463e-20
28	7946807	8174710	NM_001000	RPL39	0.783299	5.405410e-23	9.365954e-19	3.344984e-20
29	7946807	8103222	GENSCAN00000040988		0.780713	9.271320e-23	1.606442e-18	5.539454e-20
30	7946807	7898875	NM_000975	RPL11	0.771244	6.288496e-22	1.089608e-17	3.632026e-19
31	7946807	7903582	NM_001035006	RPL17	0.768181	1.145419e-21	1.984668e-17	6.402154e-19
32	7946807	7979864	NM_004450	ERH	0.758553	7.116861e-21	1.233138e-16	3.853558e-18
33	7946807	7921987	NM_019026	TMCO1	0.756629	1.014832e-20	1.758399e-16	5.328482e-18
34	7946807	8141050	NM_001006	RPS3A	0.752421	2.180437e-20	3.778042e-16	1.111189e-17
35	7946807	7965467	ENST00000358888		0.750114	3.294745e-20	5.708805e-16	1.631087e-17
36	7946807	7982129	ENST00000358888		0.750114	3.294745e-20	5.708805e-16	1.585779e-17
37	7946807	7905691	NM_001030	RPS27	0.749886	3.430796e-20	5.944541e-16	1.606633e-17
38	7946807	7990898	NM_000661	RPL9	0.749184	3.886343e-20	6.733866e-16	1.772070e-17
39	7946807	8099887	NM_001024921	RPL9	0.748989	4.022918e-20	6.970510e-16	1.787310e-17
40	7946807	7990949	NM_000661	RPL9	0.748012	4.780633e-20	8.283403e-16	2.070851e-17
41	7946807	8171834	NM_000661	RPL9	0.744595	8.687536e-20	1.505289e-15	3.671437e-17
42	7946807	8078248	NM_002128	HMGB1	0.741177	1.564115e-19	2.710142e-15	6.452720e-17
43	7946807	8079019	NM_001030	RPS27	0.739541	2.065924e-19	3.579626e-15	8.324711e-17
44	7946807	7955768	NM_002624	PFDN5	0.736159	3.647817e-19	6.320572e-15	1.436494e-16
45	7946807	7900157	NM_001030	RPS27	0.731778	7.522747e-19	1.303466e-14	2.896592e-16
46	7946807	7900228	NM_004552	NDUFS5	0.731265	8.181020e-19	1.417525e-14	3.081577e-16
47	7946807	8151935	NM_000989	RPL30	0.728428	1.296053e-18	2.245670e-14	4.778022e-16
48	7946807	7990090	ENST00000401798		0.726431	1.785635e-18	3.093970e-14	6.445771e-16
49	7946807	8089249	NM_000986	RPL24	0.723143	3.007854e-18	5.211709e-14	1.063614e-15
50	7946807	8092265	NM_020409	MRPL47	0.721736	3.751268e-18	6.499822e-14	1.299964e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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