[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16465.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16465	7999360	NM_000982	RPL21		ribosomal protein L21

Fetching correlation data, please wait...
Getting list of correlations for id 16465.
Getting list of p-values for id 16465.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.107 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7999360	7968226	NM_000982	RPL21	0.983180	7.005339e-78	1.213815e-73	1.213815e-73
2	7999360	8131661	NM_000982	RPL21	0.981380	1.260373e-75	2.183849e-71	1.091924e-71
3	7999360	7936727	NM_000982	RPL21	0.978965	6.332033e-73	1.097151e-68	3.657171e-69
4	7999360	7924144	NR_026911	RPL21P28	0.978945	6.645477e-73	1.151462e-68	2.878655e-69
5	7999360	8102728	GENSCAN00000031902		0.880488	3.632548e-35	6.294116e-31	1.258823e-31
6	7999360	7990965	NM_001021	RPS17	0.802393	7.904969e-25	1.369694e-20	2.282823e-21
7	7999360	7990916	NM_001021	RPS17	0.802393	7.904969e-25	1.369694e-20	1.956706e-21
8	7999360	8152323	NM_001568	EIF3E	0.784957	3.810689e-23	6.602782e-19	8.253477e-20
9	7999360	7946807	NM_021029	RPL36A	0.783789	4.876916e-23	8.450232e-19	9.389147e-20
10	7999360	8168843	NM_021029	RPL36A	0.777056	1.963596e-22	3.402322e-18	3.402322e-19
11	7999360	7903582	NM_001035006	RPL17	0.762654	3.303366e-21	5.723743e-17	5.203403e-18
12	7999360	8109222	NM_000971	RPL7	0.762034	3.713779e-21	6.434866e-17	5.362388e-18
13	7999360	7902448	NM_001035006	RPL17	0.758716	6.905716e-21	1.196553e-16	9.204257e-18
14	7999360	7917906	NM_000971	RPL7	0.758485	7.208039e-21	1.248937e-16	8.920978e-18
15	7999360	7957540	NM_014050	MRPL42	0.758323	7.426838e-21	1.286848e-16	8.578989e-18
16	7999360	8151376	NM_000971	RPL7	0.756451	1.048495e-20	1.816728e-16	1.135455e-17
17	7999360	8138361	NM_021029	RPL36A	0.752915	1.994610e-20	3.456062e-16	2.032977e-17
18	7999360	8075691	NM_021104	RPL41	0.751725	2.470591e-20	4.280794e-16	2.378219e-17
19	7999360	8061364	NM_021104	RPL41	0.749401	3.739257e-20	6.479011e-16	3.410006e-17
20	7999360	8105432	NM_021104	RPL41	0.746500	6.233532e-20	1.080084e-15	5.400420e-17
21	7999360	8151935	NM_000989	RPL30	0.745644	7.238284e-20	1.254177e-15	5.972273e-17
22	7999360	7898875	NM_000975	RPL11	0.730327	9.530976e-19	1.651432e-14	7.506510e-16
23	7999360	8126450	NM_000986	RPL24	0.725130	2.196620e-18	3.806084e-14	1.654819e-15
24	7999360	8104738	NM_006713	SUB1	0.724995	2.244235e-18	3.888586e-14	1.620244e-15
25	7999360	7946812	NM_001017	RPS13	0.722146	3.517801e-18	6.095293e-14	2.438117e-15
26	7999360	8103222	GENSCAN00000040988		0.721449	3.923684e-18	6.798567e-14	2.614834e-15
27	7999360	8083333	NM_032025	EIF2A	0.720502	4.547857e-18	7.880072e-14	2.918545e-15
28	7999360	8084715	ENST00000412545		0.719391	5.404373e-18	9.364157e-14	3.344342e-15
29	7999360	7965467	ENST00000358888		0.716796	8.060065e-18	1.396567e-13	4.815750e-15
30	7999360	7982129	ENST00000358888		0.716796	8.060065e-18	1.396567e-13	4.655225e-15
31	7999360	8089249	NM_000986	RPL24	0.713282	1.375353e-17	2.383075e-13	7.687338e-15
32	7999360	8174710	NM_001000	RPL39	0.709537	2.409491e-17	4.174925e-13	1.304664e-14
33	7999360	8137240	NM_153236	GIMAP7	0.709068	2.583138e-17	4.475804e-13	1.356304e-14
34	7999360	8127526	NM_001000	RPL39	0.709032	2.597047e-17	4.499903e-13	1.323501e-14
35	7999360	8125835	NM_001014	RPS10	0.708489	2.814228e-17	4.876212e-13	1.393203e-14
36	7999360	8132589	ENST00000275524		0.707578	3.219355e-17	5.578177e-13	1.549494e-14
37	7999360	7923438	NM_001030	RPS27	0.699912	9.783382e-17	1.695167e-12	4.581531e-14
38	7999360	7938368	GENSCAN00000035818		0.699151	1.090338e-16	1.889229e-12	4.971656e-14
39	7999360	8111099	GENSCAN00000039269		0.696956	1.487770e-16	2.577860e-12	6.609897e-14
40	7999360	7978833	NM_001001	RPL36AL	0.695990	1.704577e-16	2.953521e-12	7.383803e-14
41	7999360	8141222	NM_001006	RPS3A	0.695378	1.857146e-16	3.217877e-12	7.848480e-14
42	7999360	7983335	NM_016396	CTDSPL2	0.694290	2.162153e-16	3.746362e-12	8.919909e-14
43	7999360	8046201	NM_003142	SSB	0.694274	2.167165e-16	3.755047e-12	8.732668e-14
44	7999360	8067978	NM_021130	PPIA	0.694174	2.197632e-16	3.807837e-12	8.654176e-14
45	7999360	8097782	NM_001006	RPS3A	0.692532	2.760493e-16	4.783106e-12	1.062913e-13
46	7999360	7988031	NM_001006	RPS3A	0.690038	3.892400e-16	6.744362e-12	1.466166e-13
47	7999360	8027650	NM_005499	UBA2	0.686731	6.106148e-16	1.058012e-11	2.251090e-13
48	7999360	7974587	NM_018477	ACTR10	0.686702	6.130575e-16	1.062245e-11	2.213010e-13
49	7999360	7919436	NM_178230	PPIAL4A	0.686360	6.419856e-16	1.112368e-11	2.270140e-13
50	7999360	7900228	NM_004552	NDUFS5	0.684019	8.794809e-16	1.523876e-11	3.047753e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation