[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16414.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16414	7936727	NM_000982	RPL21		ribosomal protein L21

Fetching correlation data, please wait...
Getting list of correlations for id 16414.
Getting list of p-values for id 16414.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7936727	8131661	NM_000982	RPL21	0.999337	5.025601e-150	8.707859e-146	8.707859e-146
2	7936727	7968226	NM_000982	RPL21	0.998172	2.355340e-127	4.081098e-123	2.040549e-123
3	7936727	7924144	NR_026911	RPL21P28	0.996953	6.079278e-116	1.053357e-111	3.511189e-112
4	7936727	7999360	NM_000982	RPL21	0.978965	6.332033e-73	1.097151e-68	2.742879e-69
5	7936727	8102728	GENSCAN00000031902		0.847489	4.302412e-30	7.454789e-26	1.490958e-26
6	7936727	7990965	NM_001021	RPS17	0.841859	2.393529e-29	4.147267e-25	6.912112e-26
7	7936727	7990916	NM_001021	RPS17	0.841859	2.393529e-29	4.147267e-25	5.924667e-26
8	7936727	8109222	NM_000971	RPL7	0.828657	1.042558e-27	1.806440e-23	2.258049e-24
9	7936727	7917906	NM_000971	RPL7	0.822804	5.019796e-27	8.697801e-23	9.664224e-24
10	7936727	8152323	NM_001568	EIF3E	0.822655	5.221212e-27	9.046794e-23	9.046794e-24
11	7936727	8151376	NM_000971	RPL7	0.815830	3.033848e-26	5.256748e-22	4.778862e-23
12	7936727	7946807	NM_021029	RPL36A	0.806711	2.850821e-25	4.939618e-21	4.116349e-22
13	7936727	8168843	NM_021029	RPL36A	0.800262	1.295513e-24	2.244736e-20	1.726720e-21
14	7936727	7902448	NM_001035006	RPL17	0.790341	1.197554e-23	2.075002e-19	1.482144e-20
15	7936727	7903582	NM_001035006	RPL17	0.787084	2.421923e-23	4.196466e-19	2.797644e-20
16	7936727	8151935	NM_000989	RPL30	0.773637	3.910060e-22	6.774960e-18	4.234350e-19
17	7936727	8138361	NM_021029	RPL36A	0.767780	1.238257e-21	2.145529e-17	1.262076e-18
18	7936727	8075691	NM_021104	RPL41	0.767256	1.370291e-21	2.374303e-17	1.319057e-18
19	7936727	8103222	GENSCAN00000040988		0.767103	1.411455e-21	2.445629e-17	1.287173e-18
20	7936727	8089249	NM_000986	RPL24	0.766737	1.514762e-21	2.624629e-17	1.312314e-18
21	7936727	7957540	NM_014050	MRPL42	0.765127	2.063949e-21	3.576205e-17	1.702955e-18
22	7936727	7978833	NM_001001	RPL36AL	0.763668	2.725925e-21	4.723210e-17	2.146914e-18
23	7936727	8061364	NM_021104	RPL41	0.762283	3.543376e-21	6.139608e-17	2.669395e-18
24	7936727	7988031	NM_001006	RPS3A	0.761752	3.915976e-21	6.785212e-17	2.827172e-18
25	7936727	8105432	NM_021104	RPL41	0.761437	4.155087e-21	7.199519e-17	2.879808e-18
26	7936727	8104738	NM_006713	SUB1	0.758324	7.425105e-21	1.286548e-16	4.948261e-18
27	7936727	8083333	NM_032025	EIF2A	0.758029	7.841503e-21	1.358697e-16	5.032212e-18
28	7936727	8137240	NM_153236	GIMAP7	0.755485	1.251256e-20	2.168051e-16	7.743040e-18
29	7936727	8012469	NM_000987	RPL26	0.753769	1.709352e-20	2.961795e-16	1.021309e-17
30	7936727	8126450	NM_000986	RPL24	0.753095	1.931149e-20	3.346102e-16	1.115367e-17
31	7936727	8141222	NM_001006	RPS3A	0.750052	3.331104e-20	5.771805e-16	1.861872e-17
32	7936727	8125835	NM_001014	RPS10	0.749828	3.466677e-20	6.006711e-16	1.877097e-17
33	7936727	8097782	NM_001006	RPS3A	0.748940	4.057454e-20	7.030351e-16	2.130409e-17
34	7936727	7946812	NM_001017	RPS13	0.747339	5.380784e-20	9.323284e-16	2.742142e-17
35	7936727	7955719	NM_001099668	HIGD1A	0.745999	6.804673e-20	1.179046e-15	3.368702e-17
36	7936727	8046201	NM_003142	SSB	0.743406	1.066935e-19	1.848679e-15	5.135219e-17
37	7936727	7974587	NM_018477	ACTR10	0.743312	1.084467e-19	1.879055e-15	5.078527e-17
38	7936727	7898875	NM_000975	RPL11	0.740010	1.907943e-19	3.305894e-15	8.699720e-17
39	7936727	8127526	NM_001000	RPL39	0.738123	2.624861e-19	4.548096e-15	1.166179e-16
40	7936727	8174710	NM_001000	RPL39	0.736895	3.225851e-19	5.589433e-15	1.397358e-16
41	7936727	8035829	NM_000995	RPL34	0.735247	4.245991e-19	7.357028e-15	1.794397e-16
42	7936727	8111099	GENSCAN00000039269		0.734012	5.210634e-19	9.028466e-15	2.149635e-16
43	7936727	7938368	GENSCAN00000035818		0.732949	6.208131e-19	1.075683e-14	2.501588e-16
44	7936727	7927267	NM_019054	FAM35A	0.732552	6.626625e-19	1.148195e-14	2.609535e-16
45	7936727	7921987	NM_019026	TMCO1	0.732323	6.880843e-19	1.192244e-14	2.649430e-16
46	7936727	7975713	NM_015962	FCF1	0.730153	9.803889e-19	1.698720e-14	3.692869e-16
47	7936727	8022170	NM_001024662	RPL6	0.729314	1.123221e-18	1.946204e-14	4.140860e-16
48	7936727	7978570	NM_021249	SNX6	0.727951	1.399524e-18	2.424955e-14	5.051990e-16
49	7936727	7900228	NM_004552	NDUFS5	0.727609	1.478630e-18	2.562023e-14	5.228618e-16
50	7936727	7966534	NM_001024662	RPL6	0.727547	1.493438e-18	2.587681e-14	5.175362e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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