[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
11152	8168843	NM_021029	RPL36A		ribosomal protein L36a
11414	7946807	NM_021029	RPL36A		ribosomal protein L36a
12677	8138361	NM_021029	RPL36A		ribosomal protein L36a

Fetching correlation data, please wait...
Getting list of correlations for id 11152.
Getting list of p-values for id 11152.
1 of 3 done.
Getting list of correlations for id 11414.
Getting list of p-values for id 11414.
2 of 3 done.
Getting list of correlations for id 12677.
Getting list of p-values for id 12677.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.251 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8168843	7946807	NM_021029	RPL36A	0.992514	6.914234e-96	3.594088e-91	3.594088e-91
2	7946807	8168843	NM_021029	RPL36A	0.992514	6.914234e-96	3.594088e-91	1.797044e-91
3	8138361	7946807	NM_021029	RPL36A	0.967276	3.614665e-63	1.878939e-58	6.263130e-59
4	7946807	8138361	NM_021029	RPL36A	0.967276	3.614665e-63	1.878939e-58	4.697347e-59
5	8168843	8138361	NM_021029	RPL36A	0.961625	1.146443e-59	5.959327e-55	1.191865e-55
6	8138361	8168843	NM_021029	RPL36A	0.961625	1.146443e-59	5.959327e-55	9.932212e-56
7	7946807	8035829	NM_000995	RPL34	0.891971	2.700164e-37	1.403572e-32	2.005103e-33
8	7946807	8109222	NM_000971	RPL7	0.885887	3.870314e-36	2.011828e-31	2.514785e-32
9	8168843	8035829	NM_000995	RPL34	0.883636	9.979978e-36	5.187692e-31	5.764103e-32
10	7946807	7917906	NM_000971	RPL7	0.883185	1.203633e-35	6.256604e-31	6.256604e-32
11	8168843	8109222	NM_000971	RPL7	0.880531	3.570331e-35	1.855894e-30	1.687176e-31
12	8168843	7917906	NM_000971	RPL7	0.874995	3.180007e-34	1.653000e-29	1.377500e-30
13	7946807	7990916	NM_001021	RPS17	0.870823	1.545022e-33	8.031180e-29	6.177831e-30
14	7946807	7990965	NM_001021	RPS17	0.870823	1.545022e-33	8.031180e-29	5.736557e-30
15	8168843	7990916	NM_001021	RPS17	0.865328	1.141621e-32	5.934260e-28	3.956173e-29
16	8168843	7990965	NM_001021	RPS17	0.865328	1.141621e-32	5.934260e-28	3.708912e-29
17	8138361	8035829	NM_000995	RPL34	0.862836	2.747867e-32	1.428369e-27	8.402170e-29
18	7946807	8151376	NM_000971	RPL7	0.861984	3.694911e-32	1.920652e-27	1.067029e-28
19	8168843	8151376	NM_000971	RPL7	0.855280	3.557948e-31	1.849457e-26	9.733983e-28
20	8138361	7917906	NM_000971	RPL7	0.854343	4.837536e-31	2.514600e-26	1.257300e-27
21	8138361	8109222	NM_000971	RPL7	0.853002	7.484132e-31	3.890327e-26	1.852537e-27
22	8138361	8151376	NM_000971	RPL7	0.836775	1.065385e-28	5.537976e-24	2.517262e-25
23	8138361	7990916	NM_001021	RPS17	0.834628	1.970870e-28	1.024478e-23	4.454252e-25
24	8138361	7990965	NM_001021	RPS17	0.834628	1.970870e-28	1.024478e-23	4.268658e-25
25	8168843	8075691	NM_021104	RPL41	0.813838	5.001073e-26	2.599608e-21	1.039843e-22
26	7946807	8075691	NM_021104	RPL41	0.813809	5.037546e-26	2.618567e-21	1.007141e-22
27	8168843	8061364	NM_021104	RPL41	0.812721	6.602316e-26	3.431950e-21	1.271093e-22
28	7946807	8061364	NM_021104	RPL41	0.812514	6.949129e-26	3.612227e-21	1.290081e-22
29	7946807	8012469	NM_000987	RPL26	0.811706	8.482250e-26	4.409158e-21	1.520399e-22
30	8168843	8105432	NM_021104	RPL41	0.811345	9.271864e-26	4.819608e-21	1.606536e-22
31	7946807	8040036	NM_001011	RPS7	0.810941	1.023813e-25	5.321883e-21	1.716736e-22
32	7946807	8105432	NM_021104	RPL41	0.810412	1.165307e-25	6.057381e-21	1.892932e-22
33	7946807	8131661	NM_000982	RPL21	0.809021	1.634684e-25	8.497253e-21	2.574925e-22
34	7946807	7968226	NM_000982	RPL21	0.808965	1.657255e-25	8.614580e-21	2.533700e-22
35	8168843	8040036	NM_001011	RPS7	0.807467	2.378724e-25	1.236484e-20	3.532812e-22
36	7946807	7924144	NR_026911	RPL21P28	0.806916	2.714369e-25	1.410956e-20	3.919322e-22
37	7946807	7936727	NM_000982	RPL21	0.806711	2.850821e-25	1.481885e-20	4.005096e-22
38	8168843	8012469	NM_000987	RPL26	0.805679	3.646379e-25	1.895424e-20	4.987959e-22
39	8168843	8131661	NM_000982	RPL21	0.802385	7.918783e-25	4.116263e-20	1.055452e-21
40	8168843	7968226	NM_000982	RPL21	0.801749	9.183771e-25	4.773816e-20	1.193454e-21
41	8168843	7924144	NR_026911	RPL21P28	0.801111	1.064748e-24	5.534666e-20	1.349919e-21
42	8138361	8012469	NM_000987	RPL26	0.800786	1.147858e-24	5.966681e-20	1.420638e-21
43	8138361	8040036	NM_001011	RPS7	0.800320	1.278239e-24	6.644414e-20	1.545213e-21
44	8168843	7936727	NM_000982	RPL21	0.800262	1.295513e-24	6.734208e-20	1.530502e-21
45	7946807	8141222	NM_001006	RPS3A	0.791490	9.314788e-24	4.841920e-19	1.075982e-20
46	8138361	8075691	NM_021104	RPL41	0.790965	1.045143e-23	5.432758e-19	1.181034e-20
47	7946807	8097782	NM_001006	RPS3A	0.790661	1.116916e-23	5.805841e-19	1.235285e-20
48	7946807	7988031	NM_001006	RPS3A	0.789740	1.365001e-23	7.095411e-19	1.478211e-20
49	8138361	8061364	NM_021104	RPL41	0.789669	1.386243e-23	7.205830e-19	1.470578e-20
50	8168843	7954243	ENST00000449390		0.787447	2.240466e-23	1.164617e-18	2.329233e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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