[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16556.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16556	8061364	NM_021104	RPL41		ribosomal protein L41

Fetching correlation data, please wait...
Getting list of correlations for id 16556.
Getting list of p-values for id 16556.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.090 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8061364	8105432	NM_021104	RPL41	0.998838	1.743434e-137	3.020848e-133	3.020848e-133
2	8061364	8075691	NM_021104	RPL41	0.998776	2.569703e-136	4.452525e-132	2.226263e-132
3	8061364	7965467	ENST00000358888		0.958656	4.936069e-58	8.552727e-54	2.850909e-54
4	8061364	7982129	ENST00000358888		0.958656	4.936069e-58	8.552727e-54	2.138182e-54
5	8061364	8174710	NM_001000	RPL39	0.895709	4.854984e-38	8.412231e-34	1.682446e-34
6	8061364	8127526	NM_001000	RPL39	0.894367	9.059302e-38	1.569705e-33	2.616176e-34
7	8061364	7923438	NM_001030	RPS27	0.891352	3.567323e-37	6.181101e-33	8.830144e-34
8	8061364	8079019	NM_001030	RPS27	0.878221	9.007189e-35	1.560676e-30	1.950845e-31
9	8061364	7905691	NM_001030	RPS27	0.873166	6.403885e-34	1.109601e-29	1.232890e-30
10	8061364	7900157	NM_001030	RPS27	0.865901	9.305298e-33	1.612329e-28	1.612329e-29
11	8061364	7990916	NM_001021	RPS17	0.864714	1.419947e-32	2.460342e-28	2.236675e-29
12	8061364	7990965	NM_001021	RPS17	0.864714	1.419947e-32	2.460342e-28	2.050285e-29
13	8061364	8040036	NM_001011	RPS7	0.851159	1.353444e-30	2.345113e-26	1.803933e-27
14	8061364	8151935	NM_000989	RPL30	0.847250	4.634171e-30	8.029627e-26	5.735448e-27
15	8061364	7999827	NM_001019	RPS15A	0.840542	3.541971e-29	6.137173e-25	4.091449e-26
16	8061364	8065325	ENST00000457423		0.838835	5.854156e-29	1.014350e-24	6.339685e-26
17	8061364	8125835	NM_001014	RPS10	0.830426	6.409162e-28	1.110516e-23	6.532444e-25
18	8061364	8168843	NM_021029	RPL36A	0.812721	6.602316e-26	1.143983e-21	6.355463e-23
19	8061364	7946807	NM_021029	RPL36A	0.812514	6.949129e-26	1.204076e-21	6.337240e-23
20	8061364	7898875	NM_000975	RPL11	0.793114	6.511256e-24	1.128205e-19	5.641027e-21
21	8061364	8138361	NM_021029	RPL36A	0.789669	1.386243e-23	2.401943e-19	1.143783e-20
22	8061364	8106776	NM_001867	COX7C	0.780647	9.398785e-23	1.628527e-18	7.402397e-20
23	8061364	7990949	NM_000661	RPL9	0.772644	4.765797e-22	8.257697e-18	3.590303e-19
24	8061364	7990898	NM_000661	RPL9	0.770504	7.275148e-22	1.260565e-17	5.252354e-19
25	8061364	8035829	NM_000995	RPL34	0.769090	9.596944e-22	1.662862e-17	6.651450e-19
26	8061364	7968226	NM_000982	RPL21	0.769005	9.757526e-22	1.690687e-17	6.502641e-19
27	8061364	8099887	NM_001024921	RPL9	0.768332	1.112417e-21	1.927485e-17	7.138834e-19
28	8061364	8171834	NM_000661	RPL9	0.768238	1.132896e-21	1.962970e-17	7.010606e-19
29	8061364	7924144	NR_026911	RPL21P28	0.765552	1.902608e-21	3.296649e-17	1.136775e-18
30	8061364	8131661	NM_000982	RPL21	0.764799	2.197620e-21	3.807816e-17	1.269272e-18
31	8061364	8164100	NM_007209	RPL35	0.764073	2.523868e-21	4.373106e-17	1.410679e-18
32	8061364	7936727	NM_000982	RPL21	0.762283	3.543376e-21	6.139608e-17	1.918628e-18
33	8061364	8089249	NM_000986	RPL24	0.758894	6.680944e-21	1.157607e-16	3.507901e-18
34	8061364	7964828	GENSCAN00000052941		0.757585	8.511569e-21	1.474800e-16	4.337646e-18
35	8061364	7899160	NM_001803	CD52	0.756951	9.565926e-21	1.657488e-16	4.735680e-18
36	8061364	7917906	NM_000971	RPL7	0.756719	9.981887e-21	1.729562e-16	4.804338e-18
37	8061364	8141222	NM_001006	RPS3A	0.753123	1.921371e-20	3.329159e-16	8.997727e-18
38	8061364	8109222	NM_000971	RPL7	0.751795	2.439689e-20	4.227249e-16	1.112434e-17
39	8061364	7999360	NM_000982	RPL21	0.749401	3.739257e-20	6.479011e-16	1.661285e-17
40	8061364	8097782	NM_001006	RPS3A	0.748851	4.122043e-20	7.142264e-16	1.785566e-17
41	8061364	8122699	BC071678	RPS18P9	0.747162	5.551023e-20	9.618257e-16	2.345916e-17
42	8061364	8103222	GENSCAN00000040988		0.740930	1.631439e-19	2.826795e-15	6.730463e-17
43	8061364	8007441	NM_000988	RPL27	0.735592	4.009484e-19	6.947233e-15	1.615636e-16
44	8061364	8151376	NM_000971	RPL7	0.733659	5.523127e-19	9.569923e-15	2.174982e-16
45	8061364	7988031	NM_001006	RPS3A	0.732188	7.034419e-19	1.218854e-14	2.708564e-16
46	8061364	8126450	NM_000986	RPL24	0.728499	1.281266e-18	2.220050e-14	4.826196e-16
47	8061364	8005191	BC027986	NCRNA00188	0.723868	2.682787e-18	4.648466e-14	9.890353e-16
48	8061364	8089230	GENSCAN00000044426		0.717496	7.240179e-18	1.254506e-13	2.613554e-15
49	8061364	8101718	NM_032906	PIGY	0.715145	1.037147e-17	1.797064e-13	3.667477e-15
50	8061364	7954063	NR_003932	RPL13AP20	0.714915	1.074030e-17	1.860972e-13	3.721944e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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