[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 17104.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17104	8079019	NM_001030	RPS27		ribosomal protein S27

Fetching correlation data, please wait...
Getting list of correlations for id 17104.
Getting list of p-values for id 17104.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.086 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8079019	7900157	NM_001030	RPS27	0.996374	4.650129e-112	8.057278e-108	8.057278e-108
2	8079019	7905691	NM_001030	RPS27	0.988963	3.052048e-87	5.288284e-83	2.644142e-83
3	8079019	7923438	NM_001030	RPS27	0.981605	6.775067e-76	1.173916e-71	3.913053e-72
4	8079019	8174710	NM_001000	RPL39	0.897200	2.404946e-38	4.167050e-34	1.041762e-34
5	8079019	8127526	NM_001000	RPL39	0.895383	5.653311e-38	9.795492e-34	1.959098e-34
6	8079019	8061364	NM_021104	RPL41	0.878221	9.007189e-35	1.560676e-30	2.601126e-31
7	8079019	8105432	NM_021104	RPL41	0.876626	1.687979e-34	2.924761e-30	4.178230e-31
8	8079019	8075691	NM_021104	RPL41	0.874724	3.530844e-34	6.117893e-30	7.647367e-31
9	8079019	7999827	NM_001019	RPS15A	0.839080	5.448133e-29	9.439980e-25	1.048887e-25
10	8079019	8040036	NM_001011	RPS7	0.826464	1.892010e-27	3.278286e-23	3.278286e-24
11	8079019	7990916	NM_001021	RPS17	0.825844	2.235580e-27	3.873590e-23	3.521445e-24
12	8079019	7990965	NM_001021	RPS17	0.825844	2.235580e-27	3.873590e-23	3.227992e-24
13	8079019	8065325	ENST00000457423		0.822884	4.915621e-27	8.517297e-23	6.551767e-24
14	8079019	7899160	NM_001803	CD52	0.822196	5.891171e-27	1.020763e-22	7.291166e-24
15	8079019	7982129	ENST00000358888		0.805021	4.262406e-25	7.385472e-21	4.923648e-22
16	8079019	7965467	ENST00000358888		0.805021	4.262406e-25	7.385472e-21	4.615920e-22
17	8079019	8125835	NM_001014	RPS10	0.779121	1.287600e-22	2.231024e-18	1.312367e-19
18	8079019	8151935	NM_000989	RPL30	0.772383	5.019677e-22	8.697594e-18	4.831997e-19
19	8079019	8164100	NM_007209	RPL35	0.764288	2.422538e-21	4.197531e-17	2.209227e-18
20	8079019	8007441	NM_000988	RPL27	0.753715	1.726146e-20	2.990893e-16	1.495446e-17
21	8079019	8122699	BC071678	RPS18P9	0.749583	3.621016e-20	6.274134e-16	2.987683e-17
22	8079019	8099887	NM_001024921	RPL9	0.744765	8.433876e-20	1.461338e-15	6.642444e-17
23	8079019	7990949	NM_000661	RPL9	0.743884	9.824958e-20	1.702371e-15	7.401611e-17
24	8079019	7964828	GENSCAN00000052941		0.743845	9.892128e-20	1.714009e-15	7.141704e-17
25	8079019	7990898	NM_000661	RPL9	0.742461	1.255428e-19	2.175280e-15	8.701121e-17
26	8079019	8171834	NM_000661	RPL9	0.741785	1.409732e-19	2.442642e-15	9.394778e-17
27	8079019	7946807	NM_021029	RPL36A	0.739541	2.065924e-19	3.579626e-15	1.325787e-16
28	8079019	8168843	NM_021029	RPL36A	0.736184	3.632583e-19	6.294176e-15	2.247920e-16
29	8079019	7898875	NM_000975	RPL11	0.732668	6.501702e-19	1.126550e-14	3.884655e-16
30	8079019	7990090	ENST00000401798		0.732069	7.173122e-19	1.242887e-14	4.142956e-16
31	8079019	8139889	ENST00000433398		0.731660	7.668948e-19	1.328799e-14	4.286447e-16
32	8079019	8138361	NM_021029	RPL36A	0.730008	1.003724e-18	1.739153e-14	5.434853e-16
33	8079019	7957530	NM_021104	RPL41	0.726159	1.864921e-18	3.231349e-14	9.791966e-16
34	8079019	8089230	GENSCAN00000044426		0.724004	2.625794e-18	4.549714e-14	1.338151e-15
35	8079019	8129095	ENST00000435100		0.719328	5.457137e-18	9.455581e-14	2.701595e-15
36	8079019	7954063	NR_003932	RPL13AP20	0.718992	5.748609e-18	9.960615e-14	2.766838e-15
37	8079019	8094359			0.712776	1.484281e-17	2.571815e-13	6.950850e-15
38	8079019	8035829	NM_000995	RPL34	0.711779	1.724330e-17	2.987747e-13	7.862493e-15
39	8079019	8116929	NM_002948	RPL15	0.711395	1.826461e-17	3.164709e-13	8.114638e-15
40	8079019	8002711	ENST00000443762		0.707957	3.044316e-17	5.274887e-13	1.318722e-14
41	8079019	8141222	NM_001006	RPS3A	0.707625	3.196969e-17	5.539388e-13	1.351070e-14
42	8079019	7953564	NM_138425	C12orf57	0.705493	4.371376e-17	7.574283e-13	1.803401e-14
43	8079019	8097782	NM_001006	RPS3A	0.703017	6.263219e-17	1.085228e-12	2.523786e-14
44	8079019	7902448	NM_001035006	RPL17	0.701640	7.638911e-17	1.323594e-12	3.008168e-14
45	8079019	8103222	GENSCAN00000040988		0.696853	1.509715e-16	2.615883e-12	5.813073e-14
46	8079019	7915594	ENST00000455333		0.695934	1.718031e-16	2.976832e-12	6.471374e-14
47	8079019	8150872	NM_001023	RPS20	0.692406	2.809081e-16	4.867294e-12	1.035595e-13
48	8079019	7981958	NR_003320	SNORD116-5	0.690404	3.701500e-16	6.413590e-12	1.336165e-13
49	8079019	7981962	NR_003320	SNORD116-5	0.690404	3.701500e-16	6.413590e-12	1.308896e-13
50	8079019	8031933	NM_001009	RPS5	0.689100	4.425052e-16	7.667287e-12	1.533457e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation