[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 1326.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1326	7981962	NR_003320	SNORD116-5		small nucleolar RNA, C/D box 116-5

Fetching correlation data, please wait...
Getting list of correlations for id 1326.
Getting list of p-values for id 1326.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.088 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7981962	7981958	NR_003320	SNORD116-5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7981962	7981966	NR_003318	SNORD116-3	0.926603	1.500620e-45	2.600124e-41	1.300062e-41
3	7981962	7981953	NR_003318	SNORD116-3	0.926603	1.500620e-45	2.600124e-41	8.667079e-42
4	7981962	7981964	NR_003323	SNORD116-8	0.828265	1.160623e-27	2.011011e-23	5.027529e-24
5	7981962	8009241	NR_004380	SNORD104	0.799773	1.449743e-24	2.511969e-20	5.023938e-21
6	7981962	7977732	NR_002916	SNORD8	0.793326	6.213187e-24	1.076559e-19	1.794265e-20
7	7981962	7981978	NR_003330	SNORD116-15	0.788315	1.858787e-23	3.220720e-19	4.601028e-20
8	7981962	7981988	NR_003334	SNORD116-20	0.786157	2.952643e-23	5.116044e-19	6.395055e-20
9	7981962	8043276	NR_004378	SNORD94	0.755782	1.185126e-20	2.053467e-16	2.281630e-17
10	7981962	8060503	NR_002738	SNORD57	0.748584	4.321498e-20	7.487859e-16	7.487859e-17
11	7981962	8127987	NR_002743	SNORD50A	0.746521	6.210923e-20	1.076167e-15	9.783334e-17
12	7981962	8030360	NR_000021	SNORD32A	0.736263	3.584929e-19	6.211606e-15	5.176338e-16
13	7981962	7981982	NR_003332	SNORD116-17	0.732604	6.570817e-19	1.138525e-14	8.757888e-16
14	7981962	7981986	NR_003332	SNORD116-17	0.732604	6.570817e-19	1.138525e-14	8.132325e-16
15	7981962	7981976	NR_003329	SNORD116-14	0.710827	1.988157e-17	3.444879e-13	2.296586e-14
16	7981962	7900157	NM_001030	RPS27	0.692464	2.786602e-16	4.828346e-12	3.017716e-13
17	7981962	8079019	NM_001030	RPS27	0.690404	3.701500e-16	6.413590e-12	3.772700e-13
18	7981962	7905691	NM_001030	RPS27	0.684161	8.629540e-16	1.495240e-11	8.306891e-13
19	7981962	8034512	NR_002751	SNORD41	0.682142	1.129471e-15	1.957034e-11	1.030018e-12
20	7981962	7953383	NR_004387	SCARNA10	0.678208	1.896915e-15	3.286785e-11	1.643393e-12
21	7981962	8117368	NM_003542	HIST1H4C	0.677271	2.143838e-15	3.714628e-11	1.768870e-12
22	7981962	8129095	ENST00000435100		0.676275	2.440316e-15	4.228336e-11	1.921971e-12
23	7981962	7953564	NM_138425	C12orf57	0.675814	2.590608e-15	4.488747e-11	1.951629e-12
24	7981962	8049299	NR_003006	SCARNA6	0.671810	4.334376e-15	7.510173e-11	3.129239e-12
25	7981962	7923438	NM_001030	RPS27	0.665414	9.702329e-15	1.681123e-10	6.724490e-12
26	7981962	7957530	NM_021104	RPL41	0.658060	2.392080e-14	4.144757e-10	1.594137e-11
27	7981962	7899480	NR_002907	SNORA73A	0.656707	2.816498e-14	4.880146e-10	1.807462e-11
28	7981962	8052022	AY779046	RPL18A	0.655595	3.219030e-14	5.577614e-10	1.992005e-11
29	7981962	8030362	NR_000020	SNORD33	0.639724	2.042238e-13	3.538586e-9	1.220202e-10
30	7981962	8030364	NR_000019	SNORD34	0.635126	3.419129e-13	5.924325e-9	1.974775e-10
31	7981962	7952339	NR_001453	SNORD14C	0.634235	3.774770e-13	6.540544e-9	2.109853e-10
32	7981962	7902398	NR_002749	SNORD45A	0.630793	5.513978e-13	9.554070e-9	2.985647e-10
33	7981962	8031933	NM_001009	RPS5	0.630724	5.555953e-13	9.626799e-9	2.917212e-10
34	7981962	8065325	ENST00000457423		0.630263	5.842852e-13	1.012391e-8	2.977621e-10
35	7981962	8174710	NM_001000	RPL39	0.615353	2.852788e-12	4.943025e-8	1.412293e-9
36	7981962	8127526	NM_001000	RPL39	0.614368	3.158655e-12	5.473001e-8	1.520278e-9
37	7981962	8116929	NM_002948	RPL15	0.614273	3.189704e-12	5.526800e-8	1.493730e-9
38	7981962	8002711	ENST00000443762		0.609861	5.010875e-12	8.682343e-8	2.284827e-9
39	7981962	7897801	NR_002754	RNU5E	0.603889	9.133634e-12	1.582585e-7	4.057910e-9
40	7981962	7968789	NM_014059	C13orf15	0.600526	1.273699e-11	2.206939e-7	5.517347e-9
41	7981962	8030366	NR_000018	SNORD35A	0.600454	1.282779e-11	2.222671e-7	5.421149e-9
42	7981962	8026875	NR_000012	SNORA68	0.595660	2.046974e-11	3.546792e-7	8.444743e-9
43	7981962	7977507	NR_002312	RPPH1	0.592240	2.843766e-11	4.927393e-7	1.145905e-8
44	7981962	8031152	NM_001013	RPS9	0.592199	2.855013e-11	4.946882e-7	1.124291e-8
45	7981962	7999827	NM_001019	RPS15A	0.590859	3.244049e-11	5.620963e-7	1.249103e-8
46	7981962	8150872	NM_001023	RPS20	0.590076	3.494249e-11	6.054485e-7	1.316192e-8
47	7981962	8117422	NM_003540	HIST1H4F	0.587717	4.366585e-11	7.565982e-7	1.609783e-8
48	7981962	7964828	GENSCAN00000052941		0.586865	4.730658e-11	8.196811e-7	1.707669e-8
49	7981962	7922414	NR_003942	SNORD76	0.585396	5.427631e-11	9.404456e-7	1.919277e-8
50	7981962	8007441	NM_000988	RPL27	0.581448	7.827273e-11	1.356232e-6	2.712463e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation