[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
13680	7981982	NR_003332	SNORD116-17		small nucleolar RNA, C/D box 116-17
13681	7981986	NR_003332	SNORD116-17		small nucleolar RNA, C/D box 116-17

Fetching correlation data, please wait...
Getting list of correlations for id 13680.
Getting list of p-values for id 13680.
1 of 2 done.
Getting list of correlations for id 13681.
Getting list of p-values for id 13681.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.175 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7981986	7981982	NR_003332	SNORD116-17	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7981982	7981986	NR_003332	SNORD116-17	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7981986	7981988	NR_003334	SNORD116-20	0.917265	5.626233e-43	1.949715e-38	6.499049e-39
4	7981982	7981988	NR_003334	SNORD116-20	0.917265	5.626233e-43	1.949715e-38	4.874287e-39
5	7981986	7981978	NR_003330	SNORD116-15	0.914046	3.697742e-42	1.281416e-37	2.562831e-38
6	7981982	7981978	NR_003330	SNORD116-15	0.914046	3.697742e-42	1.281416e-37	2.135693e-38
7	7981982	7981976	NR_003329	SNORD116-14	0.879607	5.180749e-35	1.795337e-30	2.564767e-31
8	7981986	7981976	NR_003329	SNORD116-14	0.879607	5.180749e-35	1.795337e-30	2.244171e-31
9	7981986	7981964	NR_003323	SNORD116-8	0.762550	3.369076e-21	1.167520e-16	1.297244e-17
10	7981982	7981964	NR_003323	SNORD116-8	0.762550	3.369076e-21	1.167520e-16	1.167520e-17
11	7981986	7981953	NR_003318	SNORD116-3	0.732972	6.185268e-19	2.143443e-14	1.948584e-15
12	7981982	7981966	NR_003318	SNORD116-3	0.732972	6.185268e-19	2.143443e-14	1.786202e-15
13	7981986	7981966	NR_003318	SNORD116-3	0.732972	6.185268e-19	2.143443e-14	1.648802e-15
14	7981982	7981953	NR_003318	SNORD116-3	0.732972	6.185268e-19	2.143443e-14	1.531031e-15
15	7981986	7981962	NR_003320	SNORD116-5	0.732604	6.570817e-19	2.277051e-14	1.518034e-15
16	7981986	7981958	NR_003320	SNORD116-5	0.732604	6.570817e-19	2.277051e-14	1.423157e-15
17	7981982	7981958	NR_003320	SNORD116-5	0.732604	6.570817e-19	2.277051e-14	1.339442e-15
18	7981982	7981962	NR_003320	SNORD116-5	0.732604	6.570817e-19	2.277051e-14	1.265028e-15
19	7981982	8043276	NR_004378	SNORD94	0.718615	6.093350e-18	2.111590e-13	1.111363e-14
20	7981986	8043276	NR_004378	SNORD94	0.718615	6.093350e-18	2.111590e-13	1.055795e-14
21	7981986	7902398	NR_002749	SNORD45A	0.715003	1.059709e-17	3.672315e-13	1.748721e-14
22	7981982	7902398	NR_002749	SNORD45A	0.715003	1.059709e-17	3.672315e-13	1.669234e-14
23	7981982	8127987	NR_002743	SNORD50A	0.711118	1.903559e-17	6.596593e-13	2.868084e-14
24	7981986	8127987	NR_002743	SNORD50A	0.711118	1.903559e-17	6.596593e-13	2.748581e-14
25	7981982	7922414	NR_003942	SNORD76	0.692329	2.839247e-16	9.839125e-12	3.935650e-13
26	7981986	7922414	NR_003942	SNORD76	0.692329	2.839247e-16	9.839125e-12	3.784279e-13
27	7981982	7977732	NR_002916	SNORD8	0.674304	3.148448e-15	1.091063e-10	4.040974e-12
28	7981986	7977732	NR_002916	SNORD8	0.674304	3.148448e-15	1.091063e-10	3.896654e-12
29	7981982	8060503	NR_002738	SNORD57	0.654058	3.868098e-14	1.340451e-9	4.622244e-11
30	7981986	8060503	NR_002738	SNORD57	0.654058	3.868098e-14	1.340451e-9	4.468169e-11
31	7981982	8116929	NM_002948	RPL15	0.643231	1.370439e-13	4.749120e-9	1.531974e-10
32	7981986	8116929	NM_002948	RPL15	0.643231	1.370439e-13	4.749120e-9	1.484100e-10
33	7981986	8002711	ENST00000443762		0.641788	1.615802e-13	5.599399e-9	1.696788e-10
34	7981982	8002711	ENST00000443762		0.641788	1.615802e-13	5.599399e-9	1.646882e-10
35	7981986	8052022	AY779046	RPL18A	0.632726	4.459494e-13	1.545393e-8	4.415409e-10
36	7981982	8052022	AY779046	RPL18A	0.632726	4.459494e-13	1.545393e-8	4.292759e-10
37	7981986	8049299	NR_003006	SCARNA6	0.618751	2.002389e-12	6.939079e-8	1.875427e-9
38	7981982	8049299	NR_003006	SCARNA6	0.618751	2.002389e-12	6.939079e-8	1.826074e-9
39	7981982	7929593	NR_026712	RPL13AP5	0.612334	3.893439e-12	1.349232e-7	3.459570e-9
40	7981986	7929593	NR_026712	RPL13AP5	0.612334	3.893439e-12	1.349232e-7	3.373081e-9
41	7981982	8137953	NM_001080495	TNRC18	-0.603695	9.311360e-12	3.226759e-7	7.870143e-9
42	7981986	8137953	NM_001080495	TNRC18	-0.603695	9.311360e-12	3.226759e-7	7.682759e-9
43	7981986	8027258	AK298173	ZNF90	0.603394	9.593549e-12	3.324549e-7	7.731508e-9
44	7981982	8027258	AK298173	ZNF90	0.603394	9.593549e-12	3.324549e-7	7.555792e-9
45	7981982	7953564	NM_138425	C12orf57	0.601713	1.133092e-11	3.926617e-7	8.725815e-9
46	7981986	7953564	NM_138425	C12orf57	0.601713	1.133092e-11	3.926617e-7	8.536123e-9
47	7981986	7957530	NM_021104	RPL41	0.598953	1.486203e-11	5.150288e-7	1.095806e-8
48	7981982	7957530	NM_021104	RPL41	0.598953	1.486203e-11	5.150288e-7	1.072977e-8
49	7981986	7899480	NR_002907	SNORA73A	0.597644	1.688636e-11	5.851798e-7	1.194244e-8
50	7981982	7899480	NR_002907	SNORA73A	0.597644	1.688636e-11	5.851798e-7	1.170360e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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