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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 15804.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
15804 8109222 NM_000971 RPL7 link to infopage ribosomal protein L7

Fetching correlation data, please wait...
Getting list of correlations for id 15804.
Getting list of p-values for id 15804.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.090 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8109222 7917906 NM_000971 RPL7 link to infopage 0.993231 3.952781e-98 6.848984e-94 6.848984e-94
2 8109222 8151376 NM_000971 RPL7 link to infopage 0.985965 6.732160e-82 1.166481e-77 5.832407e-78
3 8109222 7988031 NM_001006 RPS3A link to infopage 0.931947 3.506887e-47 6.076384e-43 2.025461e-43
4 8109222 8141050 NM_001006 RPS3A link to infopage 0.924331 6.800866e-45 1.178386e-40 2.945965e-41
5 8109222 8097782 NM_001006 RPS3A link to infopage 0.922387 2.388636e-44 4.138789e-40 8.277579e-41
6 8109222 8141222 NM_001006 RPS3A link to infopage 0.921903 3.250186e-44 5.631598e-40 9.385996e-41
7 8109222 8103222 GENSCAN00000040988 link to infopage 0.911508 1.549694e-41 2.685155e-37 3.835936e-38
8 8109222 7990916 NM_001021 RPS17 link to infopage 0.891788 2.932793e-37 5.081651e-33 6.352063e-34
9 8109222 7990965 NM_001021 RPS17 link to infopage 0.891788 2.932793e-37 5.081651e-33 5.646279e-34
10 8109222 8012469 NM_000987 RPL26 link to infopage 0.887017 2.387935e-36 4.137574e-32 4.137574e-33
11 8109222 7946807 NM_021029 RPL36A link to infopage 0.885887 3.870314e-36 6.706094e-32 6.096449e-33
12 8109222 8035829 NM_000995 RPL34 link to infopage 0.883680 9.795774e-36 1.697314e-31 1.414428e-32
13 8109222 8168843 NM_021029 RPL36A link to infopage 0.880531 3.570331e-35 6.186312e-31 4.758702e-32
14 8109222 7954243 ENST00000449390 link to infopage 0.874609 3.690496e-34 6.394523e-30 4.567517e-31
15 8109222 7902448 NM_001035006 RPL17 link to infopage 0.872833 7.264400e-34 1.258703e-29 8.391351e-31
16 8109222 8078248 NM_002128 HMGB1 link to infopage 0.859107 9.905998e-32 1.716412e-27 1.072758e-28
17 8109222 8099887 NM_001024921 RPL9 link to infopage 0.857125 1.929976e-31 3.344069e-27 1.967099e-28
18 8109222 7990898 NM_000661 RPL9 link to infopage 0.857012 2.004268e-31 3.472795e-27 1.929331e-28
19 8109222 7903582 NM_001035006 RPL17 link to infopage 0.856436 2.427739e-31 4.206543e-27 2.213970e-28
20 8109222 8171834 NM_000661 RPL9 link to infopage 0.855839 2.958086e-31 5.125476e-27 2.562738e-28
21 8109222 7990949 NM_000661 RPL9 link to infopage 0.855165 3.694981e-31 6.402293e-27 3.048711e-28
22 8109222 8138361 NM_021029 RPL36A link to infopage 0.853002 7.484132e-31 1.296776e-26 5.894434e-28
23 8109222 7983360 NM_004048 B2M link to infopage 0.848163 3.486894e-30 6.041741e-26 2.626844e-27
24 8109222 7921987 NM_019026 TMCO1 link to infopage 0.840146 3.981767e-29 6.899207e-25 2.874670e-26
25 8109222 7936727 NM_000982 RPL21 link to infopage 0.828657 1.042558e-27 1.806440e-23 7.225758e-25
26 8109222 8131661 NM_000982 RPL21 link to infopage 0.826847 1.706141e-27 2.956231e-23 1.137012e-24
27 8109222 7957052 NM_006431 CCT2 link to infopage 0.823697 3.964928e-27 6.870030e-23 2.544456e-24
28 8109222 7968226 NM_000982 RPL21 link to infopage 0.821243 7.560207e-27 1.309957e-22 4.678418e-24
29 8109222 7924144 NR_026911 RPL21P28 link to infopage 0.821141 7.764109e-27 1.345287e-22 4.638921e-24
30 8109222 8158952 NM_001402 EEF1A1 link to infopage 0.816754 2.400938e-26 4.160105e-22 1.386702e-23
31 8109222 8152323 NM_001568 EIF3E link to infopage 0.813982 4.824793e-26 8.359919e-22 2.696748e-23
32 8109222 8138531 NM_001402 EEF1A1 link to infopage 0.813876 4.954073e-26 8.583923e-22 2.682476e-23
33 8109222 7898875 NM_000975 RPL11 link to infopage 0.813495 5.446975e-26 9.437974e-22 2.859992e-23
34 8109222 7927267 NM_019054 FAM35A link to infopage 0.813353 5.643096e-26 9.777793e-22 2.875821e-23
35 8109222 8040036 NM_001011 RPS7 link to infopage 0.809784 1.358145e-25 2.353258e-21 6.723593e-23
36 8109222 8127526 NM_001000 RPL39 link to infopage 0.807781 2.205811e-25 3.822009e-21 1.061669e-22
37 8109222 8150870 NM_002806 PSMC6 link to infopage 0.807113 2.589332e-25 4.486536e-21 1.212577e-22
38 8109222 8174710 NM_001000 RPL39 link to infopage 0.805497 3.807197e-25 6.596730e-21 1.735982e-22
39 8109222 7988605 NM_004236 COPS2 link to infopage 0.804666 4.635900e-25 8.032625e-21 2.059647e-22
40 8109222 8137240 NM_153236 GIMAP7 link to infopage 0.804227 5.142162e-25 8.909824e-21 2.227456e-22
41 8109222 8042259 NM_005917 MDH1 link to infopage 0.802471 7.762579e-25 1.345022e-20 3.280542e-22
42 8109222 8109750 NM_001002 RPLP0 link to infopage 0.801462 9.816672e-25 1.700935e-20 4.049844e-22
43 8109222 7916372 NM_004872 TMEM59 link to infopage 0.800975 1.098820e-24 1.903926e-20 4.427735e-22
44 8109222 8089249 NM_000986 RPL24 link to infopage 0.799499 1.544109e-24 2.675477e-20 6.080630e-22
45 8109222 7974303 NM_030755 TMX1 link to infopage 0.796076 3.361115e-24 5.823803e-20 1.294178e-21
46 8109222 7971375 NM_003295 TPT1 link to infopage 0.791980 8.364330e-24 1.449287e-19 3.150625e-21
47 8109222 7974603 NM_002788 PSMA3 link to infopage 0.789573 1.415648e-23 2.452893e-19 5.218920e-21
48 8109222 7917472 NM_001514 GTF2B link to infopage 0.787534 2.198888e-23 3.810013e-19 7.937528e-21
49 8109222 8131975 NM_006024 TAX1BP1 link to infopage 0.786992 2.469933e-23 4.279652e-19 8.733985e-21
50 8109222 7978833 NM_001001 RPL36AL link to infopage 0.783495 5.187473e-23 8.988335e-19 1.797667e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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