[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 4 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16260	8131661	NM_000982	RPL21		ribosomal protein L21
16414	7936727	NM_000982	RPL21		ribosomal protein L21
16465	7999360	NM_000982	RPL21		ribosomal protein L21
16533	7968226	NM_000982	RPL21		ribosomal protein L21

Fetching correlation data, please wait...
Getting list of correlations for id 16260.
Getting list of p-values for id 16260.
1 of 4 done.
Getting list of correlations for id 16414.
Getting list of p-values for id 16414.
2 of 4 done.
Getting list of correlations for id 16465.
Getting list of p-values for id 16465.
3 of 4 done.
Getting list of correlations for id 16533.
Getting list of p-values for id 16533.
4 of 4 done.
Calculating corrections for multiple testing (n=69308), please wait...
Done; whole program took 0.424 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7936727	8131661	NM_000982	RPL21	0.999337	5.025601e-150	3.483143e-145	3.483143e-145
2	8131661	7936727	NM_000982	RPL21	0.999337	5.025601e-150	3.483143e-145	1.741572e-145
3	7936727	7968226	NM_000982	RPL21	0.998172	2.355340e-127	1.632439e-122	5.441463e-123
4	7968226	7936727	NM_000982	RPL21	0.998172	2.355340e-127	1.632439e-122	4.081098e-123
5	8131661	7968226	NM_000982	RPL21	0.998084	2.665548e-126	1.847438e-121	3.694875e-122
6	7968226	8131661	NM_000982	RPL21	0.998084	2.665548e-126	1.847438e-121	3.079063e-122
7	7936727	7924144	NR_026911	RPL21P28	0.996953	6.079278e-116	4.213426e-111	6.019180e-112
8	8131661	7924144	NR_026911	RPL21P28	0.996752	1.620129e-114	1.122879e-109	1.403599e-110
9	7968226	7924144	NR_026911	RPL21P28	0.995094	2.607992e-105	1.807547e-100	2.008386e-101
10	7999360	7968226	NM_000982	RPL21	0.983180	7.005339e-78	4.855260e-73	4.855260e-74
11	7968226	7999360	NM_000982	RPL21	0.983180	7.005339e-78	4.855260e-73	4.413873e-74
12	7999360	8131661	NM_000982	RPL21	0.981380	1.260373e-75	8.735395e-71	7.279496e-72
13	8131661	7999360	NM_000982	RPL21	0.981380	1.260373e-75	8.735395e-71	6.719535e-72
14	7936727	7999360	NM_000982	RPL21	0.978965	6.332033e-73	4.388606e-68	3.134718e-69
15	7999360	7936727	NM_000982	RPL21	0.978965	6.332033e-73	4.388606e-68	2.925737e-69
16	7999360	7924144	NR_026911	RPL21P28	0.978945	6.645477e-73	4.605847e-68	2.878655e-69
17	7999360	8102728	GENSCAN00000031902		0.880488	3.632548e-35	2.517646e-30	1.480968e-31
18	8131661	8102728	GENSCAN00000031902		0.853496	6.376590e-31	4.419487e-26	2.455270e-27
19	7968226	8102728	GENSCAN00000031902		0.853051	7.365569e-31	5.104929e-26	2.686805e-27
20	7936727	8102728	GENSCAN00000031902		0.847489	4.302412e-30	2.981916e-25	1.490958e-26
21	7968226	7990965	NM_001021	RPS17	0.841992	2.300437e-29	1.594387e-24	7.592318e-26
22	7968226	7990916	NM_001021	RPS17	0.841992	2.300437e-29	1.594387e-24	7.247212e-26
23	7936727	7990916	NM_001021	RPS17	0.841859	2.393529e-29	1.658907e-24	7.212638e-26
24	7936727	7990965	NM_001021	RPS17	0.841859	2.393529e-29	1.658907e-24	6.912112e-26
25	8131661	7990965	NM_001021	RPS17	0.840152	3.974685e-29	2.754775e-24	1.101910e-25
26	8131661	7990916	NM_001021	RPS17	0.840152	3.974685e-29	2.754775e-24	1.059529e-25
27	7936727	8109222	NM_000971	RPL7	0.828657	1.042558e-27	7.225758e-23	2.676207e-24
28	8131661	8109222	NM_000971	RPL7	0.826847	1.706141e-27	1.182492e-22	4.223187e-24
29	8131661	8152323	NM_001568	EIF3E	0.823691	3.971424e-27	2.752515e-22	9.491430e-24
30	7936727	7917906	NM_000971	RPL7	0.822804	5.019796e-27	3.479120e-22	1.159707e-23
31	7936727	8152323	NM_001568	EIF3E	0.822655	5.221212e-27	3.618718e-22	1.167328e-23
32	8131661	7917906	NM_000971	RPL7	0.821548	6.981553e-27	4.838775e-22	1.512117e-23
33	7968226	8109222	NM_000971	RPL7	0.821243	7.560207e-27	5.239829e-22	1.587827e-23
34	7968226	8152323	NM_001568	EIF3E	0.820368	9.494278e-27	6.580294e-22	1.935381e-23
35	7968226	7917906	NM_000971	RPL7	0.815887	2.990122e-26	2.072394e-21	5.921125e-23
36	7936727	8151376	NM_000971	RPL7	0.815830	3.033848e-26	2.102699e-21	5.840832e-23
37	8131661	8151376	NM_000971	RPL7	0.815111	3.635924e-26	2.519986e-21	6.810773e-23
38	8131661	7946807	NM_021029	RPL36A	0.809021	1.634684e-25	1.132967e-20	2.981492e-22
39	7968226	7946807	NM_021029	RPL36A	0.808965	1.657255e-25	1.148611e-20	2.945155e-22
40	7968226	8151376	NM_000971	RPL7	0.807196	2.538410e-25	1.759321e-20	4.398304e-22
41	7936727	7946807	NM_021029	RPL36A	0.806711	2.850821e-25	1.975847e-20	4.819140e-22
42	7999360	7990965	NM_001021	RPS17	0.802393	7.904969e-25	5.478776e-20	1.304470e-21
43	7999360	7990916	NM_001021	RPS17	0.802393	7.904969e-25	5.478776e-20	1.274134e-21
44	8131661	8168843	NM_021029	RPL36A	0.802385	7.918783e-25	5.488350e-20	1.247352e-21
45	7968226	8168843	NM_021029	RPL36A	0.801749	9.183771e-25	6.365088e-20	1.414464e-21
46	7936727	8168843	NM_021029	RPL36A	0.800262	1.295513e-24	8.978944e-20	1.951944e-21
47	8131661	7902448	NM_001035006	RPL17	0.790641	1.121670e-23	7.774067e-19	1.654057e-20
48	7936727	7902448	NM_001035006	RPL17	0.790341	1.197554e-23	8.300008e-19	1.729168e-20
49	7968226	7902448	NM_001035006	RPL17	0.789961	1.301070e-23	9.017453e-19	1.840297e-20
50	8131661	7903582	NM_001035006	RPL17	0.787435	2.245974e-23	1.556639e-18	3.113279e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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