[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16774	7918050	NM_002295	RPSA		ribosomal protein SA
16877	8078905	NM_002295	RPSA		ribosomal protein SA

Fetching correlation data, please wait...
Getting list of correlations for id 16774.
Getting list of p-values for id 16774.
1 of 2 done.
Getting list of correlations for id 16877.
Getting list of p-values for id 16877.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.235 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7918050	8078905	NM_002295	RPSA	0.996790	8.926041e-115	3.093230e-110	3.093230e-110
2	8078905	7918050	NM_002295	RPSA	0.996790	8.926041e-115	3.093230e-110	1.546615e-110
3	7918050	8109750	NM_001002	RPLP0	0.947318	9.754856e-53	3.380448e-48	1.126816e-48
4	8078905	8109750	NM_001002	RPLP0	0.946997	1.321977e-52	4.581180e-48	1.145295e-48
5	7918050	7964828	GENSCAN00000052941		0.940077	6.159787e-50	2.134613e-45	4.269225e-46
6	8078905	7964828	GENSCAN00000052941		0.936256	1.347870e-48	4.670907e-44	7.784846e-45
7	8078905	7942586	NM_001005	RPS3	0.925767	2.630902e-45	9.117128e-41	1.302447e-41
8	7918050	7942586	NM_001005	RPS3	0.924334	6.788524e-45	2.352495e-40	2.940619e-41
9	7918050	8125835	NM_001014	RPS10	0.902718	1.619927e-39	5.613694e-35	6.237438e-36
10	8078905	8125835	NM_001014	RPS10	0.900455	4.990178e-39	1.729296e-34	1.729296e-35
11	7918050	8115158	NM_001025071	RPS14	0.898745	1.147882e-38	3.977872e-34	3.616247e-35
12	8078905	8115158	NM_001025071	RPS14	0.898631	1.212400e-38	4.201451e-34	3.501209e-35
13	8078905	8076209	NM_000967	RPL3	0.892621	2.013063e-37	6.976068e-33	5.366206e-34
14	8078905	8089249	NM_000986	RPL24	0.888905	1.053334e-36	3.650223e-32	2.607302e-33
15	7918050	8089249	NM_000986	RPL24	0.886943	2.464810e-36	8.541553e-32	5.694369e-33
16	7918050	8042052	NM_002954	RPS27A	0.886414	3.092091e-36	1.071533e-31	6.697083e-33
17	7918050	8076209	NM_000967	RPL3	0.886288	3.262500e-36	1.130587e-31	6.650509e-33
18	7918050	8164100	NM_007209	RPL35	0.885915	3.825529e-36	1.325699e-31	7.364994e-33
19	8078905	8030351	NM_012423	RPL13A	0.884326	7.481198e-36	2.592535e-31	1.364492e-32
20	8078905	8164100	NM_007209	RPL35	0.883000	1.299204e-35	4.502262e-31	2.251131e-32
21	8078905	8042052	NM_002954	RPS27A	0.882522	1.582804e-35	5.485049e-31	2.611928e-32
22	7918050	8030351	NM_012423	RPL13A	0.882185	1.818264e-35	6.301011e-31	2.864096e-32
23	7918050	8001782	NM_002954	RPS27A	0.880088	4.270039e-35	1.479739e-30	6.433649e-32
24	8078905	8001782	NM_002954	RPS27A	0.876965	1.478007e-34	5.121887e-30	2.134119e-31
25	7918050	8063903	NM_001024	RPS21	0.871873	1.043224e-33	3.615189e-29	1.446076e-30
26	7918050	8172154	NM_002952	RPS2	0.871793	1.075195e-33	3.725980e-29	1.433069e-30
27	8078905	8172154	NM_002952	RPS2	0.871511	1.195236e-33	4.141972e-29	1.534064e-30
28	8078905	8036737	NM_001020	RPS16	0.870039	2.066598e-33	7.161590e-29	2.557711e-30
29	7918050	8036737	NM_001020	RPS16	0.869947	2.138659e-33	7.411308e-29	2.555623e-30
30	8078905	8063903	NM_001024	RPS21	0.866130	8.575081e-33	2.971609e-28	9.905362e-30
31	7918050	8031933	NM_001009	RPS5	0.860157	6.929201e-32	2.401245e-27	7.745952e-29
32	7918050	7908407	NM_002954	RPS27A	0.858666	1.150114e-31	3.985604e-27	1.245501e-28
33	8078905	8151935	NM_000989	RPL30	0.856064	2.746259e-31	9.516886e-27	2.883905e-28
34	8078905	7908407	NM_002954	RPS27A	0.855814	2.983437e-31	1.033880e-26	3.040825e-28
35	7918050	8179544	NM_022551	RPS18	0.855744	3.052780e-31	1.057910e-26	3.022601e-28
36	7918050	8178253	NM_022551	RPS18	0.855744	3.052780e-31	1.057910e-26	2.938640e-28
37	7918050	8118644	NM_022551	RPS18	0.855744	3.052780e-31	1.057910e-26	2.859217e-28
38	8078905	8031933	NM_001009	RPS5	0.855705	3.092216e-31	1.071576e-26	2.819938e-28
39	7918050	8000323	NM_005003	NDUFAB1	0.855608	3.193195e-31	1.106570e-26	2.837358e-28
40	7918050	8013348	NM_002952	RPS2	0.854205	5.060889e-31	1.753801e-26	4.384502e-28
41	7918050	8151935	NM_000989	RPL30	0.853913	5.566555e-31	1.929034e-26	4.704961e-28
42	8078905	8013348	NM_002952	RPS2	0.853416	6.543688e-31	2.267650e-26	5.399166e-28
43	8078905	8160308	NM_001010	RPS6	0.851968	1.044653e-30	3.620139e-26	8.418929e-28
44	7918050	8122136	NM_001016	RPS12	0.851384	1.259779e-30	4.365637e-26	9.921903e-28
45	7918050	8129095	ENST00000435100		0.850579	1.628295e-30	5.642693e-26	1.253932e-27
46	8078905	8179544	NM_022551	RPS18	0.850456	1.692978e-30	5.866845e-26	1.275401e-27
47	8078905	8118644	NM_022551	RPS18	0.850456	1.692978e-30	5.866845e-26	1.248265e-27
48	8078905	8178253	NM_022551	RPS18	0.850456	1.692978e-30	5.866845e-26	1.222259e-27
49	8078905	8000323	NM_005003	NDUFAB1	0.848532	3.106820e-30	1.076638e-25	2.197219e-27
50	8078905	8122136	NM_001016	RPS12	0.846918	5.136787e-30	1.780102e-25	3.560205e-27

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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