[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16913	8118644	NM_022551	RPS18		ribosomal protein S18
16914	8178253	NM_022551	RPS18		ribosomal protein S18
16915	8179544	NM_022551	RPS18		ribosomal protein S18

Fetching correlation data, please wait...
Getting list of correlations for id 16913.
Getting list of p-values for id 16913.
1 of 3 done.
Getting list of correlations for id 16914.
Getting list of p-values for id 16914.
2 of 3 done.
Getting list of correlations for id 16915.
Getting list of p-values for id 16915.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.256 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118644	8179544	NM_022551	RPS18	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179544	8178253	NM_022551	RPS18	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8118644	8178253	NM_022551	RPS18	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8178253	8118644	NM_022551	RPS18	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8179544	8118644	NM_022551	RPS18	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8178253	8179544	NM_022551	RPS18	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8118644	8042052	NM_002954	RPS27A	0.874899	3.300322e-34	1.715540e-29	2.450772e-30
8	8179544	8042052	NM_002954	RPS27A	0.874899	3.300322e-34	1.715540e-29	2.144425e-30
9	8178253	8042052	NM_002954	RPS27A	0.874899	3.300322e-34	1.715540e-29	1.906156e-30
10	8179544	8063903	NM_001024	RPS21	0.868931	3.107532e-33	1.615326e-28	1.615326e-29
11	8118644	8063903	NM_001024	RPS21	0.868931	3.107532e-33	1.615326e-28	1.468478e-29
12	8178253	8063903	NM_001024	RPS21	0.868931	3.107532e-33	1.615326e-28	1.346105e-29
13	8178253	8109750	NM_001002	RPLP0	0.866972	6.335356e-33	3.293181e-28	2.533216e-29
14	8118644	8109750	NM_001002	RPLP0	0.866972	6.335356e-33	3.293181e-28	2.352272e-29
15	8179544	8109750	NM_001002	RPLP0	0.866972	6.335356e-33	3.293181e-28	2.195454e-29
16	8179544	8001782	NM_002954	RPS27A	0.865134	1.223362e-32	6.359159e-28	3.974474e-29
17	8118644	8001782	NM_002954	RPS27A	0.865134	1.223362e-32	6.359159e-28	3.740682e-29
18	8178253	8001782	NM_002954	RPS27A	0.865134	1.223362e-32	6.359159e-28	3.532866e-29
19	8178253	7908407	NM_002954	RPS27A	0.861868	3.847715e-32	2.000080e-27	1.052674e-28
20	8118644	7908407	NM_002954	RPS27A	0.861868	3.847715e-32	2.000080e-27	1.000040e-28
21	8179544	7908407	NM_002954	RPS27A	0.861868	3.847715e-32	2.000080e-27	9.524193e-29
22	8118644	8115158	NM_001025071	RPS14	0.860165	6.911363e-32	3.592596e-27	1.632998e-28
23	8179544	8115158	NM_001025071	RPS14	0.860165	6.911363e-32	3.592596e-27	1.561998e-28
24	8178253	8115158	NM_001025071	RPS14	0.860165	6.911363e-32	3.592596e-27	1.496915e-28
25	8118644	7918050	NM_002295	RPSA	0.855744	3.052780e-31	1.586865e-26	6.347462e-28
26	8178253	7918050	NM_002295	RPSA	0.855744	3.052780e-31	1.586865e-26	6.103329e-28
27	8179544	7918050	NM_002295	RPSA	0.855744	3.052780e-31	1.586865e-26	5.877280e-28
28	8179544	8122699	BC071678	RPS18P9	0.855494	3.315732e-31	1.723551e-26	6.155538e-28
29	8118644	8122699	BC071678	RPS18P9	0.855494	3.315732e-31	1.723551e-26	5.943278e-28
30	8178253	8122699	BC071678	RPS18P9	0.855494	3.315732e-31	1.723551e-26	5.745168e-28
31	8178253	8164100	NM_007209	RPL35	0.855309	3.524212e-31	1.831920e-26	5.909421e-28
32	8118644	8164100	NM_007209	RPL35	0.855309	3.524212e-31	1.831920e-26	5.724752e-28
33	8179544	8164100	NM_007209	RPL35	0.855309	3.524212e-31	1.831920e-26	5.551274e-28
34	8178253	7939068	NM_001028	RPS25	0.852194	9.715073e-31	5.049992e-26	1.485292e-27
35	8179544	7939068	NM_001028	RPS25	0.852194	9.715073e-31	5.049992e-26	1.442855e-27
36	8118644	7939068	NM_001028	RPS25	0.852194	9.715073e-31	5.049992e-26	1.402776e-27
37	8118644	8130403	ENST00000406898		0.850738	1.547841e-30	8.045831e-26	2.174549e-27
38	8178253	8130403	ENST00000406898		0.850738	1.547841e-30	8.045831e-26	2.117324e-27
39	8179544	8130403	ENST00000406898		0.850738	1.547841e-30	8.045831e-26	2.063034e-27
40	8118644	8078905	NM_002295	RPSA	0.850456	1.692978e-30	8.800267e-26	2.200067e-27
41	8179544	8078905	NM_002295	RPSA	0.850456	1.692978e-30	8.800267e-26	2.146407e-27
42	8178253	8078905	NM_002295	RPSA	0.850456	1.692978e-30	8.800267e-26	2.095302e-27
43	8179544	8029129	NM_001022	RPS19	0.849529	2.270451e-30	1.180203e-25	2.744658e-27
44	8178253	8029129	NM_001022	RPS19	0.849529	2.270451e-30	1.180203e-25	2.682280e-27
45	8118644	8029129	NM_001022	RPS19	0.849529	2.270451e-30	1.180203e-25	2.622674e-27
46	8179544	8007441	NM_000988	RPL27	0.847657	4.082958e-30	2.122362e-25	4.613831e-27
47	8178253	8007441	NM_000988	RPL27	0.847657	4.082958e-30	2.122362e-25	4.515664e-27
48	8118644	8007441	NM_000988	RPL27	0.847657	4.082958e-30	2.122362e-25	4.421588e-27
49	8178253	8127526	NM_001000	RPL39	0.826386	1.932034e-27	1.004291e-22	2.049573e-24
50	8118644	8127526	NM_001000	RPL39	0.826386	1.932034e-27	1.004291e-22	2.008581e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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