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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16887.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16887 8029129 NM_001022 RPS19 link to infopage ribosomal protein S19

Fetching correlation data, please wait...
Getting list of correlations for id 16887.
Getting list of p-values for id 16887.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8029129 7959078 GENSCAN00000059320 link to infopage 0.889542 7.964302e-37 1.379975e-32 1.379975e-32
2 8029129 7939068 NM_001028 RPS25 link to infopage 0.885889 3.868023e-36 6.702124e-32 3.351062e-32
3 8029129 8042052 NM_002954 RPS27A link to infopage 0.883274 1.160021e-35 2.009968e-31 6.699892e-32
4 8029129 8001782 NM_002954 RPS27A link to infopage 0.881437 2.469550e-35 4.278989e-31 1.069747e-31
5 8029129 7998655 NM_002952 RPS2 link to infopage 0.872215 9.176010e-34 1.589927e-29 3.179854e-30
6 8029129 8013348 NM_002952 RPS2 link to infopage 0.871781 1.079895e-33 1.871134e-29 3.118556e-30
7 8029129 7908407 NM_002954 RPS27A link to infopage 0.869306 2.707943e-33 4.692053e-29 6.702932e-30
8 8029129 8061184 ENST00000398663 link to infopage 0.859859 7.671703e-32 1.329276e-27 1.661595e-28
9 8029129 8172154 NM_002952 RPS2 link to infopage 0.859342 9.147398e-32 1.584970e-27 1.761077e-28
10 8029129 8115158 NM_001025071 RPS14 link to infopage 0.855905 2.894101e-31 5.014608e-27 5.014608e-28
11 8029129 8029958 NM_015710 GLTSCR2 link to infopage 0.854366 4.802432e-31 8.321174e-27 7.564704e-28
12 8029129 7942586 NM_001005 RPS3 link to infopage 0.850869 1.484461e-30 2.572126e-26 2.143438e-27
13 8029129 8178253 NM_022551 RPS18 link to infopage 0.849529 2.270451e-30 3.934010e-26 3.026162e-27
14 8029129 8118644 NM_022551 RPS18 link to infopage 0.849529 2.270451e-30 3.934010e-26 2.810007e-27
15 8029129 8179544 NM_022551 RPS18 link to infopage 0.849529 2.270451e-30 3.934010e-26 2.622674e-27
16 8029129 8063903 NM_001024 RPS21 link to infopage 0.838087 7.283620e-29 1.262033e-24 7.887705e-26
17 8029129 8165309 NM_003792 EDF1 link to infopage 0.834450 2.073468e-28 3.592698e-24 2.113352e-25
18 8029129 8130403 ENST00000406898 link to infopage 0.829817 7.582490e-28 1.313818e-23 7.298989e-25
19 8029129 8036737 NM_001020 RPS16 link to infopage 0.829751 7.721408e-28 1.337888e-23 7.041518e-25
20 8029129 8064502 NM_003091 SNRPB link to infopage 0.826678 1.785592e-27 3.093896e-23 1.546948e-24
21 8029129 8043100 NM_021103 TMSB10 link to infopage 0.824965 2.829106e-27 4.901992e-23 2.334282e-24
22 8029129 7918050 NM_002295 RPSA link to infopage 0.821956 6.273852e-27 1.087070e-22 4.941229e-24
23 8029129 8078905 NM_002295 RPSA link to infopage 0.819646 1.144568e-26 1.983192e-22 8.622575e-24
24 8029129 8028514 NM_013234 EIF3K link to infopage 0.818145 1.684091e-26 2.918024e-22 1.215844e-23
25 8029129 8089249 NM_000986 RPL24 link to infopage 0.815202 3.553378e-26 6.156938e-22 2.462775e-23
26 8029129 8026868 NM_000980 RPL18A link to infopage 0.812941 6.251075e-26 1.083124e-21 4.165861e-23
27 8029129 8036777 NM_001436 FBL link to infopage 0.808979 1.651528e-25 2.861602e-21 1.059853e-22
28 8029129 8109750 NM_001002 RPLP0 link to infopage 0.808182 2.002678e-25 3.470040e-21 1.239300e-22
29 8029129 7920271 NM_019554 S100A4 link to infopage 0.800665 1.180464e-24 2.045389e-20 7.053067e-22
30 8029129 8164100 NM_007209 RPL35 link to infopage 0.794738 4.537663e-24 7.862408e-20 2.620803e-21
31 8029129 7951660 ENST00000317197 link to infopage 0.791963 8.394219e-24 1.454466e-19 4.691827e-21
32 8029129 8076209 NM_000967 RPL3 link to infopage 0.789236 1.522814e-23 2.638581e-19 8.245564e-21
33 8029129 7958197 NR_001593 RPL18AP3 link to infopage 0.784679 4.041265e-23 7.002299e-19 2.121909e-20
34 8029129 8122136 NM_001016 RPS12 link to infopage 0.779961 1.083055e-22 1.876609e-18 5.519438e-20
35 8029129 8009227 NM_002805 PSMC5 link to infopage 0.776141 2.363814e-22 4.095780e-18 1.170223e-19
36 8029129 7997702 NM_001861 COX4I1 link to infopage 0.775530 2.674373e-22 4.633887e-18 1.287191e-19
37 8029129 8086148 NM_000992 RPL29 link to infopage 0.770746 6.937141e-22 1.201998e-17 3.248644e-19
38 8029129 7952056 NM_000732 CD3D link to infopage 0.767767 1.241395e-21 2.150965e-17 5.660434e-19
39 8029129 8085026 NM_000996 RPL35A link to infopage 0.766220 1.673580e-21 2.899812e-17 7.435415e-19
40 8029129 8118826 NM_003093 SNRPC link to infopage 0.764230 2.449710e-21 4.244613e-17 1.061153e-18
41 8029129 8039939 NM_017971 MRPL20 link to infopage 0.763162 3.000898e-21 5.199655e-17 1.268209e-18
42 8029129 7911559 NM_017971 MRPL20 link to infopage 0.763162 3.000898e-21 5.199655e-17 1.238013e-18
43 8029129 8171111 NM_001636 SLC25A6 link to infopage 0.763096 3.038519e-21 5.264842e-17 1.224382e-18
44 8029129 8177003 NM_001636 SLC25A6 link to infopage 0.763096 3.038519e-21 5.264842e-17 1.196555e-18
45 8029129 7940688 NM_002696 POLR2G link to infopage 0.758253 7.523740e-21 1.303638e-16 2.896974e-18
46 8029129 7911307 NR_024528 RPL23AP7 link to infopage 0.758237 7.546552e-21 1.307591e-16 2.842589e-18
47 8029129 8015712 NM_001040431 CCDC56 link to infopage 0.758092 7.751828e-21 1.343159e-16 2.857786e-18
48 8029129 8104298 NM_004553 NDUFS6 link to infopage 0.756812 9.814184e-21 1.700504e-16 3.542716e-18
49 8029129 8031933 NM_001009 RPS5 link to infopage 0.755967 1.145847e-20 1.985409e-16 4.051855e-18
50 8029129 8169659 NM_004541 NDUFA1 link to infopage 0.755097 1.343143e-20 2.327264e-16 4.654529e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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