[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16788.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16788	8115158	NM_001025071	RPS14		ribosomal protein S14

Fetching correlation data, please wait...
Getting list of correlations for id 16788.
Getting list of p-values for id 16788.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.095 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8115158	8109750	NM_001002	RPLP0	0.900659	4.513661e-39	7.820821e-35	7.820821e-35
2	8115158	7918050	NM_002295	RPSA	0.898745	1.147882e-38	1.988936e-34	9.944679e-35
3	8115158	8078905	NM_002295	RPSA	0.898631	1.212400e-38	2.100725e-34	7.002418e-35
4	8115158	7942586	NM_001005	RPS3	0.898228	1.471668e-38	2.549958e-34	6.374896e-35
5	8115158	8001782	NM_002954	RPS27A	0.889930	6.712943e-37	1.163152e-32	2.326303e-33
6	8115158	7939068	NM_001028	RPS25	0.885572	4.423605e-36	7.664781e-32	1.277464e-32
7	8115158	8042052	NM_002954	RPS27A	0.883537	1.039749e-35	1.801572e-31	2.573675e-32
8	8115158	8063903	NM_001024	RPS21	0.880342	3.853033e-35	6.676151e-31	8.345189e-32
9	8115158	7959078	GENSCAN00000059320		0.864620	1.468109e-32	2.543793e-28	2.826437e-29
10	8115158	8179544	NM_022551	RPS18	0.860165	6.911363e-32	1.197532e-27	1.197532e-28
11	8115158	8178253	NM_022551	RPS18	0.860165	6.911363e-32	1.197532e-27	1.088665e-28
12	8115158	8118644	NM_022551	RPS18	0.860165	6.911363e-32	1.197532e-27	9.979433e-29
13	8115158	8089249	NM_000986	RPL24	0.859284	9.329946e-32	1.616600e-27	1.243538e-28
14	8115158	7908407	NM_002954	RPS27A	0.856936	2.055085e-31	3.560846e-27	2.543461e-28
15	8115158	8029129	NM_001022	RPS19	0.855905	2.894101e-31	5.014608e-27	3.343072e-28
16	8115158	8169659	NM_004541	NDUFA1	0.845034	9.169354e-30	1.588774e-25	9.929837e-27
17	8115158	8122136	NM_001016	RPS12	0.839160	5.322476e-29	9.222254e-25	5.424855e-26
18	8115158	7897404	NM_007262	PARK7	0.829272	8.808428e-28	1.526236e-23	8.479091e-25
19	8115158	7978824	NM_001030001	RPS29	0.827536	1.415298e-27	2.452287e-23	1.290677e-24
20	8115158	8028514	NM_013234	EIF3K	0.824403	3.286926e-27	5.695256e-23	2.847628e-24
21	8115158	8000323	NM_005003	NDUFAB1	0.819103	1.316797e-26	2.281613e-22	1.086483e-23
22	8115158	8125835	NM_001014	RPS10	0.816834	2.352317e-26	4.075860e-22	1.852664e-23
23	8115158	8164100	NM_007209	RPL35	0.813618	5.282414e-26	9.152838e-22	3.979495e-23
24	8115158	8029958	NM_015710	GLTSCR2	0.813129	5.966313e-26	1.033783e-21	4.307430e-23
25	8115158	7940688	NM_002696	POLR2G	0.811648	8.604410e-26	1.490886e-21	5.963545e-23
26	8115158	8172154	NM_002952	RPS2	0.810897	1.034803e-25	1.793004e-21	6.896169e-23
27	8115158	8031933	NM_001009	RPS5	0.810031	1.278693e-25	2.215592e-21	8.205896e-23
28	8115158	7997702	NM_001861	COX4I1	0.804525	4.792339e-25	8.303686e-21	2.965602e-22
29	8115158	7920271	NM_019554	S100A4	0.802089	8.485380e-25	1.470262e-20	5.069869e-22
30	8115158	8007441	NM_000988	RPL27	0.799724	1.466176e-24	2.540444e-20	8.468145e-22
31	8115158	8036777	NM_001436	FBL	0.799311	1.612196e-24	2.793452e-20	9.011135e-22
32	8115158	8013348	NM_002952	RPS2	0.797602	2.380390e-24	4.124502e-20	1.288907e-21
33	8115158	7998655	NM_002952	RPS2	0.795886	3.508390e-24	6.078987e-20	1.842117e-21
34	8115158	8043100	NM_021103	TMSB10	0.795323	3.980314e-24	6.896689e-20	2.028438e-21
35	8115158	8130403	ENST00000406898		0.794452	4.836234e-24	8.379742e-20	2.394212e-21
36	8115158	8067382	NM_002792	PSMA7	0.793007	6.667254e-24	1.155235e-19	3.208986e-21
37	8115158	8165309	NM_003792	EDF1	0.792123	8.104315e-24	1.404235e-19	3.795229e-21
38	8115158	8064502	NM_003091	SNRPB	0.790775	1.089455e-23	1.887699e-19	4.967628e-21
39	8115158	8139706	NM_014302	SEC61G	0.788623	1.738934e-23	3.013051e-19	7.725772e-21
40	8115158	8076209	NM_000967	RPL3	0.788038	1.972858e-23	3.418372e-19	8.545929e-21
41	8115158	7964828	GENSCAN00000052941		0.787818	2.068878e-23	3.584746e-19	8.743282e-21
42	8115158	8036737	NM_001020	RPS16	0.787035	2.447324e-23	4.240478e-19	1.009638e-20
43	8115158	8085026	NM_000996	RPL35A	0.784062	4.603776e-23	7.976962e-19	1.855107e-20
44	8115158	8051773	ENST00000414823		0.783478	5.206120e-23	9.020644e-19	2.050146e-20
45	8115158	7930304	NM_004832	GSTO1	0.781661	7.613948e-23	1.319269e-18	2.931708e-20
46	8115158	7898582	BC072682	RPS14P3	0.778237	1.543262e-22	2.674011e-18	5.813067e-20
47	8115158	8061184	ENST00000398663		0.775925	2.469520e-22	4.278938e-18	9.104124e-20
48	8115158	8048195	NM_000998	RPL37A	0.775313	2.794132e-22	4.841392e-18	1.008623e-19
49	8115158	7952056	NM_000732	CD3D	0.772791	4.628344e-22	8.019532e-18	1.636639e-19
50	8115158	8038792	NM_001985	ETFB	0.771593	5.869735e-22	1.017049e-17	2.034098e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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