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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 9963.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
9963 8000323 NM_005003 NDUFAB1 link to infopage NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa

Fetching correlation data, please wait...
Getting list of correlations for id 9963.
Getting list of p-values for id 9963.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.108 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8000323 7918050 NM_002295 RPSA link to infopage 0.855608 3.193195e-31 5.532849e-27 5.532849e-27
2 8000323 8078905 NM_002295 RPSA link to infopage 0.848532 3.106820e-30 5.383188e-26 2.691594e-26
3 8000323 8028514 NM_013234 EIF3K link to infopage 0.842284 2.107619e-29 3.651871e-25 1.217290e-25
4 8000323 8109750 NM_001002 RPLP0 link to infopage 0.830849 5.699680e-28 9.875836e-24 2.468959e-24
5 8000323 8125835 NM_001014 RPS10 link to infopage 0.826638 1.804996e-27 3.127517e-23 6.255034e-24
6 8000323 8089249 NM_000986 RPL24 link to infopage 0.825944 2.175924e-27 3.770223e-23 6.283705e-24
7 8000323 8115158 NM_001025071 RPS14 link to infopage 0.819103 1.316797e-26 2.281613e-22 3.259448e-23
8 8000323 8097679 NM_007080 LSM6 link to infopage 0.812151 7.601843e-26 1.317171e-21 1.646464e-22
9 8000323 8052562 NM_006430 CCT4 link to infopage 0.812106 7.686856e-26 1.331901e-21 1.479891e-22
10 8000323 8139706 NM_014302 SEC61G link to infopage 0.809346 1.510985e-25 2.618083e-21 2.618083e-22
11 8000323 8043100 NM_021103 TMSB10 link to infopage 0.808592 1.813530e-25 3.142304e-21 2.856640e-22
12 8000323 7942586 NM_001005 RPS3 link to infopage 0.808177 2.004694e-25 3.473534e-21 2.894611e-22
13 8000323 7964828 GENSCAN00000052941 link to infopage 0.804323 5.027330e-25 8.710855e-21 6.700658e-22
14 8000323 7911559 NM_017971 MRPL20 link to infopage 0.800059 1.357568e-24 2.352258e-20 1.680184e-21
15 8000323 8039939 NM_017971 MRPL20 link to infopage 0.800059 1.357568e-24 2.352258e-20 1.568172e-21
16 8000323 8042052 NM_002954 RPS27A link to infopage 0.795984 3.431681e-24 5.946074e-20 3.716296e-21
17 8000323 7920271 NM_019554 S100A4 link to infopage 0.795534 3.796680e-24 6.578507e-20 3.869710e-21
18 8000323 8001782 NM_002954 RPS27A link to infopage 0.795176 4.114047e-24 7.128410e-20 3.960228e-21
19 8000323 7950644 NM_004549 NDUFC2 link to infopage 0.795017 4.263084e-24 7.386646e-20 3.887708e-21
20 8000323 7897404 NM_007262 PARK7 link to infopage 0.792542 7.389818e-24 1.280434e-19 6.402169e-21
21 8000323 8015712 NM_001040431 CCDC56 link to infopage 0.790034 1.280456e-23 2.218646e-19 1.056498e-20
22 8000323 8164100 NM_007209 RPL35 link to infopage 0.787267 2.328794e-23 4.035101e-19 1.834137e-20
23 8000323 8172358 NM_153477 UXT link to infopage 0.786910 2.513647e-23 4.355396e-19 1.893651e-20
24 8000323 8093314 NM_004547 NDUFB4 link to infopage 0.785189 3.627319e-23 6.285055e-19 2.618773e-20
25 8000323 8081945 NM_004547 NDUFB4 link to infopage 0.785189 3.627319e-23 6.285055e-19 2.514022e-20
26 8000323 8172154 NM_002952 RPS2 link to infopage 0.784959 3.808873e-23 6.599634e-19 2.538321e-20
27 8000323 7899737 NM_003757 EIF3I link to infopage 0.782436 6.477787e-23 1.122406e-18 4.157060e-20
28 8000323 7944216 NM_006476 ATP5L link to infopage 0.782295 6.670349e-23 1.155771e-18 4.127755e-20
29 8000323 8095539 NM_020368 UTP3 link to infopage 0.782162 6.858767e-23 1.188419e-18 4.097995e-20
30 8000323 7940688 NM_002696 POLR2G link to infopage 0.782088 6.965366e-23 1.206889e-18 4.022963e-20
31 8000323 8002919 NM_001130089 KARS link to infopage 0.780886 8.944012e-23 1.549729e-18 4.999126e-20
32 8000323 8140828 NM_003130 SRI link to infopage 0.779483 1.195275e-22 2.071053e-18 6.472040e-20
33 8000323 8122136 NM_001016 RPS12 link to infopage 0.774673 3.177501e-22 5.505655e-18 1.668380e-19
34 8000323 8148270 NM_005005 NDUFB9 link to infopage 0.773533 3.992121e-22 6.917149e-18 2.034455e-19
35 8000323 8013348 NM_002952 RPS2 link to infopage 0.773303 4.180033e-22 7.242743e-18 2.069355e-19
36 8000323 8169659 NM_004541 NDUFA1 link to infopage 0.772784 4.635219e-22 8.031444e-18 2.230957e-19
37 8000323 7912670 NM_006004 UQCRH link to infopage 0.772440 4.962431e-22 8.598405e-18 2.323893e-19
38 8000323 7906662 NM_016406 UFC1 link to infopage 0.771937 5.483046e-22 9.500474e-18 2.500125e-19
39 8000323 7929243 NM_017838 NHP2 link to infopage 0.771824 5.606811e-22 9.714922e-18 2.491006e-19
40 8000323 8101718 NM_032906 PIGY link to infopage 0.771619 5.838939e-22 1.011713e-17 2.529282e-19
41 8000323 8051773 ENST00000414823 link to infopage 0.771390 6.109864e-22 1.058656e-17 2.582088e-19
42 8000323 8168416 NM_032747 USMG5 link to infopage 0.769922 8.154949e-22 1.413008e-17 3.364305e-19
43 8000323 8009227 NM_002805 PSMC5 link to infopage 0.766764 1.506893e-21 2.610994e-17 6.072078e-19
44 8000323 8020058 NM_021074 NDUFV2 link to infopage 0.766432 1.606624e-21 2.783798e-17 6.326813e-19
45 8000323 8023063 NM_001001937 ATP5A1 link to infopage 0.764781 2.205352e-21 3.821214e-17 8.491587e-19
46 8000323 8077770 NM_018462 C3orf10 link to infopage 0.764774 2.208340e-21 3.826391e-17 8.318241e-19
47 8000323 7901038 NM_001012 RPS8 link to infopage 0.764368 2.385928e-21 4.134097e-17 8.795951e-19
48 8000323 8074969 NM_001355 DDT link to infopage 0.762887 3.161106e-21 5.477248e-17 1.141093e-18
49 8000323 7960553 NM_016497 MRPL51 link to infopage 0.762364 3.489627e-21 6.046477e-17 1.233975e-18
50 8000323 8064502 NM_003091 SNRPB link to infopage 0.762273 3.549828e-21 6.150788e-17 1.230158e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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