[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
13860	8081945	NM_004547	NDUFB4		NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa
13861	8093314	NM_004547	NDUFB4		NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa

Fetching correlation data, please wait...
Getting list of correlations for id 13860.
Getting list of p-values for id 13860.
1 of 2 done.
Getting list of correlations for id 13861.
Getting list of p-values for id 13861.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.233 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8093314	8081945	NM_004547	NDUFB4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8081945	8093314	NM_004547	NDUFB4	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8093314	8023063	NM_001001937	ATP5A1	0.846092	6.628023e-30	2.296875e-25	7.656250e-26
4	8081945	8023063	NM_001001937	ATP5A1	0.846092	6.628023e-30	2.296875e-25	5.742187e-26
5	8081945	8052562	NM_006430	CCT4	0.830368	6.512242e-28	2.256752e-23	4.513505e-24
6	8093314	8052562	NM_006430	CCT4	0.830368	6.512242e-28	2.256752e-23	3.761254e-24
7	8093314	8139706	NM_014302	SEC61G	0.826799	1.728427e-27	5.989692e-23	8.556703e-24
8	8081945	8139706	NM_014302	SEC61G	0.826799	1.728427e-27	5.989692e-23	7.487115e-24
9	8093314	8073192	NM_006003	UQCRFS1	0.820626	8.878528e-27	3.076765e-22	3.418628e-23
10	8081945	8073192	NM_006003	UQCRFS1	0.820626	8.878528e-27	3.076765e-22	3.076765e-23
11	8093314	7957746	NM_213611	SLC25A3	0.814841	3.890815e-26	1.348323e-21	1.225748e-22
12	8081945	7957746	NM_213611	SLC25A3	0.814841	3.890815e-26	1.348323e-21	1.123603e-22
13	8093314	8172358	NM_153477	UXT	0.812510	6.956290e-26	2.410633e-21	1.854333e-22
14	8081945	8172358	NM_153477	UXT	0.812510	6.956290e-26	2.410633e-21	1.721881e-22
15	8093314	8022972	NM_000972	RPL7A	0.810136	1.246591e-25	4.319938e-21	2.879959e-22
16	8081945	8022972	NM_000972	RPL7A	0.810136	1.246591e-25	4.319938e-21	2.699961e-22
17	8093314	8042720	NM_006429	CCT7	0.808497	1.855699e-25	6.430740e-21	3.782788e-22
18	8081945	8042720	NM_006429	CCT7	0.808497	1.855699e-25	6.430740e-21	3.572633e-22
19	8081945	7918345	NM_002790	PSMA5	0.802401	7.890284e-25	2.734299e-20	1.439105e-21
20	8093314	7918345	NM_002790	PSMA5	0.802401	7.890284e-25	2.734299e-20	1.367150e-21
21	8081945	7950644	NM_004549	NDUFC2	0.802340	8.002980e-25	2.773353e-20	1.320644e-21
22	8093314	7950644	NM_004549	NDUFC2	0.802340	8.002980e-25	2.773353e-20	1.260615e-21
23	8081945	8062349	NM_002951	RPN2	0.801742	9.199133e-25	3.187868e-20	1.386029e-21
24	8093314	8062349	NM_002951	RPN2	0.801742	9.199133e-25	3.187868e-20	1.328278e-21
25	8093314	8178322	NM_006937	SUMO2	0.801431	9.887937e-25	3.426566e-20	1.370626e-21
26	8081945	8178322	NM_006937	SUMO2	0.801431	9.887937e-25	3.426566e-20	1.317910e-21
27	8093314	7949075	NM_016404	TRMT112	0.801000	1.092539e-24	3.786083e-20	1.402253e-21
28	8081945	7949075	NM_016404	TRMT112	0.801000	1.092539e-24	3.786083e-20	1.352172e-21
29	8093314	8075798	NM_003753	EIF3D	0.799488	1.547794e-24	5.363726e-20	1.849561e-21
30	8081945	8075798	NM_003753	EIF3D	0.799488	1.547794e-24	5.363726e-20	1.787909e-21
31	8093314	8042335	NM_003375	VDAC2	0.798164	2.095126e-24	7.260449e-20	2.342080e-21
32	8081945	8042335	NM_003375	VDAC2	0.798164	2.095126e-24	7.260449e-20	2.268890e-21
33	8093314	8109368	NM_005754	G3BP1	0.796006	3.414306e-24	1.183194e-19	3.585436e-21
34	8081945	8109368	NM_005754	G3BP1	0.796006	3.414306e-24	1.183194e-19	3.479982e-21
35	8093314	8028514	NM_013234	EIF3K	0.794809	4.465853e-24	1.547597e-19	4.421705e-21
36	8081945	8028514	NM_013234	EIF3K	0.794809	4.465853e-24	1.547597e-19	4.298880e-21
37	8093314	8064844	NM_002592	PCNA	0.794569	4.711798e-24	1.632827e-19	4.413045e-21
38	8081945	8064844	NM_002592	PCNA	0.794569	4.711798e-24	1.632827e-19	4.296912e-21
39	8081945	8015712	NM_001040431	CCDC56	0.793651	5.780495e-24	2.003173e-19	5.136340e-21
40	8093314	8015712	NM_001040431	CCDC56	0.793651	5.780495e-24	2.003173e-19	5.007932e-21
41	8081945	7989619	NM_000942	PPIB	0.786996	2.468131e-23	8.553061e-19	2.086112e-20
42	8093314	7989619	NM_000942	PPIB	0.786996	2.468131e-23	8.553061e-19	2.036443e-20
43	8081945	8000323	NM_005003	NDUFAB1	0.785189	3.627319e-23	1.257011e-18	2.923281e-20
44	8093314	8000323	NM_005003	NDUFAB1	0.785189	3.627319e-23	1.257011e-18	2.856843e-20
45	8081945	7906662	NM_016406	UFC1	0.783821	4.843710e-23	1.678539e-18	3.730087e-20
46	8093314	7906662	NM_016406	UFC1	0.783821	4.843710e-23	1.678539e-18	3.648998e-20
47	8093314	8039939	NM_017971	MRPL20	0.783574	5.101960e-23	1.768033e-18	3.761773e-20
48	8081945	7911559	NM_017971	MRPL20	0.783574	5.101960e-23	1.768033e-18	3.683402e-20
49	8093314	7911559	NM_017971	MRPL20	0.783574	5.101960e-23	1.768033e-18	3.608231e-20
50	8081945	8039939	NM_017971	MRPL20	0.783574	5.101960e-23	1.768033e-18	3.536066e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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