[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16996	8022972	NM_000972	RPL7A		ribosomal protein L7a

Fetching correlation data, please wait...
Getting list of correlations for id 16996.
Getting list of p-values for id 16996.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.179 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8022972	8172154	NM_002952	RPS2	0.882935	1.334710e-35	2.312652e-31	2.312652e-31
2	8022972	8139706	NM_014302	SEC61G	0.882346	1.701818e-35	2.948740e-31	1.474370e-31
3	8022972	7911307	NR_024528	RPL23AP7	0.867811	4.676353e-33	8.102717e-29	2.700906e-29
4	8022972	7916562	NM_002136	HNRNPA1	0.866970	6.339869e-33	1.098509e-28	2.746273e-29
5	8022972	8023063	NM_001001937	ATP5A1	0.866541	7.397743e-33	1.281807e-28	2.563614e-29
6	8022972	7995574	NM_002136	HNRNPA1	0.862311	3.298498e-32	5.715307e-28	9.525512e-29
7	8022972	8048195	NM_000998	RPL37A	0.860037	7.220317e-32	1.251064e-27	1.787235e-28
8	8022972	7955890	NM_031157	HNRNPA1	0.859042	1.012929e-31	1.755102e-27	2.193878e-28
9	8022972	8052562	NM_006430	CCT4	0.854041	5.339205e-31	9.251240e-27	1.027916e-27
10	8022972	8064844	NM_002592	PCNA	0.852808	7.969017e-31	1.380792e-26	1.380792e-27
11	8022972	8022814	NM_002136	HNRNPA1	0.851282	1.301532e-30	2.255165e-26	2.050150e-27
12	8022972	8042052	NM_002954	RPS27A	0.849550	2.256021e-30	3.909007e-26	3.257506e-27
13	8022972	8034313	NR_002944	HNRPA1L-2	0.848782	2.873032e-30	4.978103e-26	3.829310e-27
14	8022972	8001782	NM_002954	RPS27A	0.847594	4.163655e-30	7.214364e-26	5.153117e-27
15	8022972	7911333	NR_024528	RPL23AP7	0.844172	1.192326e-29	2.065942e-25	1.377295e-26
16	8022972	8069470	NR_024528	RPL23AP7	0.844172	1.192326e-29	2.065942e-25	1.291214e-26
17	8022972	7939137	NM_006360	EIF3M	0.843465	1.477347e-29	2.559799e-25	1.505764e-26
18	8022972	8137240	NM_153236	GIMAP7	0.839097	5.421535e-29	9.393894e-25	5.218830e-26
19	8022972	7901038	NM_001012	RPS8	0.836344	1.206125e-28	2.089853e-24	1.099923e-25
20	8022972	8027650	NM_005499	UBA2	0.835228	1.661070e-28	2.878136e-24	1.439068e-25
21	8022972	8122136	NM_001016	RPS12	0.833864	2.448559e-28	4.242618e-24	2.020294e-25
22	8022972	8086148	NM_000992	RPL29	0.832656	3.441892e-28	5.963766e-24	2.710803e-25
23	8022972	8022170	NM_001024662	RPL6	0.832337	3.764161e-28	6.522162e-24	2.835723e-25
24	8022972	8089249	NM_000986	RPL24	0.832297	3.806789e-28	6.596023e-24	2.748343e-25
25	8022972	7966534	NM_001024662	RPL6	0.830942	5.555077e-28	9.625282e-24	3.850113e-25
26	8022972	8005943	NM_000984	RPL23A	0.830717	5.912955e-28	1.024538e-23	3.940530e-25
27	8022972	8064502	NM_003091	SNRPB	0.829130	9.160524e-28	1.587244e-23	5.878681e-25
28	8022972	7908407	NM_002954	RPS27A	0.829029	9.417225e-28	1.631723e-23	5.827580e-25
29	8022972	8013348	NM_002952	RPS2	0.828720	1.024972e-27	1.775969e-23	6.124030e-25
30	8022972	7979886	GENSCAN00000025803		0.827630	1.379496e-27	2.390253e-23	7.967511e-25
31	8022972	8042720	NM_006429	CCT7	0.827538	1.414515e-27	2.450931e-23	7.906228e-25
32	8022972	8059689	NM_005381	NCL	0.827505	1.427358e-27	2.473183e-23	7.728698e-25
33	8022972	8053763	NM_031902	MRPS5	0.824305	3.373533e-27	5.845320e-23	1.771309e-24
34	8022972	8139421	NM_012412	H2AFV	0.824279	3.397170e-27	5.886276e-23	1.731258e-24
35	8022972	8100834	NM_002092	GRSF1	0.823057	4.696139e-27	8.136999e-23	2.324857e-24
36	8022972	8078984	NM_003973	RPL14	0.822516	5.415596e-27	9.383604e-23	2.606557e-24
37	8022972	7942586	NM_001005	RPS3	0.822159	5.948981e-27	1.030780e-22	2.785892e-24
38	8022972	7951660	ENST00000317197		0.821884	6.392382e-27	1.107608e-22	2.914758e-24
39	8022972	8020241	NM_020232	PSMG2	0.820814	8.453513e-27	1.464740e-22	3.755744e-24
40	8022972	8137252	NM_130759	GIMAP1	0.820223	9.858506e-27	1.708183e-22	4.270458e-24
41	8022972	7946812	NM_001017	RPS13	0.820145	1.006025e-26	1.743139e-22	4.251558e-24
42	8022972	8132070	NM_002047	GARS	0.819985	1.048427e-26	1.816609e-22	4.325260e-24
43	8022972	8109368	NM_005754	G3BP1	0.819186	1.288917e-26	2.233306e-22	5.193735e-24
44	8022972	8092564	NM_004593	TRA2B	0.817847	1.817390e-26	3.148992e-22	7.156800e-24
45	8022972	8136631	NM_003143	SSBP1	0.817172	2.158577e-26	3.740167e-22	8.311482e-24
46	8022972	7928300	NM_173473	ANAPC16	0.816463	2.584442e-26	4.478063e-22	9.734919e-24
47	8022972	8002919	NM_001130089	KARS	0.815584	3.228079e-26	5.593293e-22	1.190062e-23
48	8022972	7975976	NM_012111	AHSA1	0.814199	4.570348e-26	7.919043e-22	1.649801e-23
49	8022972	7961693	NM_002300	LDHB	0.813704	5.170733e-26	8.959328e-22	1.828434e-23
50	8022972	7942553	NM_014752	SPCS2	0.812827	6.429805e-26	1.114092e-21	2.228185e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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