[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 11751.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11751	7975976	NM_012111	AHSA1		AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)

Fetching correlation data, please wait...
Getting list of correlations for id 11751.
Getting list of p-values for id 11751.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7975976	8104449	NM_012073	CCT5	0.862277	3.337897e-32	5.783574e-28	5.783574e-28
2	7975976	8042720	NM_006429	CCT7	0.862152	3.485890e-32	6.040001e-28	3.020001e-28
3	7975976	7942553	NM_014752	SPCS2	0.859555	8.509860e-32	1.474503e-27	4.915011e-28
4	7975976	8002919	NM_001130089	KARS	0.849808	2.079493e-30	3.603138e-26	9.007844e-27
5	7975976	7914180	NM_014752	SPCS2	0.845099	8.990270e-30	1.557744e-25	3.115488e-26
6	7975976	7918345	NM_002790	PSMA5	0.840863	3.219912e-29	5.579141e-25	9.298568e-26
7	7975976	8178322	NM_006937	SUMO2	0.840232	3.881746e-29	6.725902e-25	9.608431e-26
8	7975976	8139706	NM_014302	SEC61G	0.837780	7.963627e-29	1.379858e-24	1.724822e-25
9	7975976	8018315	NM_006937	SUMO2	0.832582	3.514078e-28	6.088844e-24	6.765382e-25
10	7975976	8132070	NM_002047	GARS	0.831296	5.033867e-28	8.722182e-24	8.722182e-25
11	7975976	8140828	NM_003130	SRI	0.831263	5.080022e-28	8.802154e-24	8.001958e-25
12	7975976	7928752	NM_014394	GHITM	0.829349	8.623834e-28	1.494252e-23	1.245210e-24
13	7975976	7933164	NM_004966	HNRNPF	0.826923	1.670999e-27	2.895341e-23	2.227185e-24
14	7975976	8108015	NM_002154	HSPA4	0.826606	1.820780e-27	3.154866e-23	2.253476e-24
15	7975976	7997230	NM_002811	PSMD7	0.823419	4.267282e-27	7.393920e-23	4.929280e-24
16	7975976	7955890	NM_031157	HNRNPA1	0.822300	5.732667e-27	9.932991e-23	6.208120e-24
17	7975976	8139421	NM_012412	H2AFV	0.822104	6.034779e-27	1.045646e-22	6.150860e-24
18	7975976	8132943	NM_001762	CCT6A	0.821062	7.925122e-27	1.373186e-22	7.628811e-24
19	7975976	7950644	NM_004549	NDUFC2	0.820323	9.604487e-27	1.664169e-22	8.758787e-24
20	7975976	8091048	NR_023350	COPB2	0.819794	1.101487e-26	1.908546e-22	9.542732e-24
21	7975976	8052562	NM_006430	CCT4	0.818952	1.368825e-26	2.371763e-22	1.129411e-23
22	7975976	7977657	NM_031314	HNRNPC	0.817194	2.146763e-26	3.719697e-22	1.690771e-23
23	7975976	7976189	NM_002802	PSMC1	0.817006	2.252128e-26	3.902262e-22	1.696636e-23
24	7975976	8020241	NM_020232	PSMG2	0.816605	2.493627e-26	4.320708e-22	1.800295e-23
25	7975976	8080923	NM_002802	PSMC1	0.816252	2.726732e-26	4.724609e-22	1.889844e-23
26	7975976	8135576	NM_015641	TES	0.816016	2.894283e-26	5.014925e-22	1.928817e-23
27	7975976	8132580	NM_006555	YKT6	0.815477	3.316365e-26	5.746266e-22	2.128247e-23
28	7975976	8006392	NM_002815	PSMD11	0.815220	3.538044e-26	6.130369e-22	2.189418e-23
29	7975976	8174636	NM_006937	SUMO2	0.815205	3.551366e-26	6.153452e-22	2.121880e-23
30	7975976	8022972	NM_000972	RPL7A	0.814199	4.570348e-26	7.919043e-22	2.639681e-23
31	7975976	8009227	NM_002805	PSMC5	0.812741	6.569192e-26	1.138244e-21	3.671755e-23
32	7975976	8053763	NM_031902	MRPS5	0.812655	6.710095e-26	1.162658e-21	3.633306e-23
33	7975976	8019762			0.812531	6.920252e-26	1.199072e-21	3.633552e-23
34	7975976	8064844	NM_002592	PCNA	0.811943	8.000791e-26	1.386297e-21	4.077344e-23
35	7975976	7971820	NM_016075	VPS36	0.811842	8.202543e-26	1.421255e-21	4.060728e-23
36	7975976	7978718	NM_006364	SEC23A	0.810565	1.122478e-25	1.944917e-21	5.402547e-23
37	7975976	8023063	NM_001001937	ATP5A1	0.809623	1.412420e-25	2.447299e-21	6.614323e-23
38	7975976	7920317	NM_004515	ILF2	0.809591	1.423510e-25	2.466517e-21	6.490833e-23
39	7975976	8117888	NM_006325	RAN	0.808938	1.667862e-25	2.889905e-21	7.410014e-23
40	7975976	7944285	NM_001655	ARCN1	0.807948	2.118683e-25	3.671042e-21	9.177604e-23
41	7975976	7970864	NM_006644	HSPH1	0.806904	2.722343e-25	4.717005e-21	1.150489e-22
42	7975976	7948997	NM_015459	ATL3	0.806500	2.998317e-25	5.195184e-21	1.236949e-22
43	7975976	7980463	NM_012245	SNW1	0.805177	4.107265e-25	7.116657e-21	1.655037e-22
44	7975976	8028514	NM_013234	EIF3K	0.805013	4.270752e-25	7.399931e-21	1.681803e-22
45	7975976	8137252	NM_130759	GIMAP1	0.804485	4.838327e-25	8.383369e-21	1.862971e-22
46	7975976	8100834	NM_002092	GRSF1	0.803629	5.918746e-25	1.025541e-20	2.229437e-22
47	7975976	7978833	NM_001001	RPL36AL	0.803061	6.762505e-25	1.171739e-20	2.493062e-22
48	7975976	8094704	NM_005339	UBE2K	0.802598	7.535769e-25	1.305723e-20	2.720256e-22
49	7975976	8171516	NM_002893	RBBP7	0.801201	1.042962e-24	1.807141e-20	3.688043e-22
50	7975976	7973902	NM_003136	SRP54	0.800864	1.127523e-24	1.953658e-20	3.907317e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation