Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14600	7920317	NM_004515	ILF2		interleukin enhancer binding factor 2, 45kDa

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7920317	8117888	NM_006325	RAN		0.914636	2.633511e-42	4.563084e-38	4.563084e-38
2	7920317	7918345	NM_002790	PSMA5		0.888428	1.297464e-36	2.248116e-32	1.124058e-32
3	7920317	7967149	NM_016237	ANAPC5		0.879668	5.055361e-35	8.759424e-31	2.919808e-31
4	7920317	8067978	NM_021130	PPIA		0.874511	3.830705e-34	6.637463e-30	1.659366e-30
5	7920317	8018315	NM_006937	SUMO2		0.865629	1.025487e-32	1.776861e-28	3.553723e-29
6	7920317	8174636	NM_006937	SUMO2		0.863483	2.191563e-32	3.797321e-28	6.328868e-29
7	7920317	7947934	NM_014342	MTCH2		0.860674	5.805030e-32	1.005838e-27	1.436911e-28
8	7920317	8178322	NM_006937	SUMO2		0.859447	8.827466e-32	1.529535e-27	1.911919e-28
9	7920317	8109368	NM_005754	G3BP1		0.852437	8.982504e-31	1.556399e-26	1.729332e-27
10	7920317	7999520	NM_015659	RSL1D1		0.851954	1.049374e-30	1.818250e-26	1.818250e-27
11	7920317	7905395	NM_002796	PSMB4		0.851939	1.054383e-30	1.826929e-26	1.660845e-27
12	7920317	8042720	NM_006429	CCT7		0.848006	3.662713e-30	6.346383e-26	5.288653e-27
13	7920317	7923798	NM_022731	NUCKS1		0.846816	5.301033e-30	9.185100e-26	7.065461e-27
14	7920317	7931187	NM_004725	BUB3		0.844551	1.062511e-29	1.841013e-25	1.315010e-26
15	7920317	8018600	NM_014230	SRP68		0.842741	1.837509e-29	3.183851e-25	2.122568e-26
16	7920317	8027650	NM_005499	UBA2		0.841441	2.711157e-29	4.697621e-25	2.936013e-26
17	7920317	8064351	NM_177559	CSNK2A1		0.840582	3.500269e-29	6.064915e-25	3.567597e-26
18	7920317	8050278	NM_005742	PDIA6		0.840416	3.676237e-29	6.369817e-25	3.538787e-26
19	7920317	8011875	NM_016041	DERL2		0.839022	5.542048e-29	9.602706e-25	5.054056e-26
20	7920317	8147447	NM_014754	PTDSS1		0.837650	8.269488e-29	1.432854e-24	7.164271e-26
21	7920317	8022170	NM_001024662	RPL6		0.834675	1.944753e-28	3.369673e-24	1.604606e-25
22	7920317	8073192	NM_006003	UQCRFS1		0.833874	2.441380e-28	4.230179e-24	1.922808e-25
23	7920317	8084092	NM_002492	NDUFB5		0.833695	2.568327e-28	4.450141e-24	1.934844e-25
24	7920317	7966534	NM_001024662	RPL6		0.831779	4.400091e-28	7.624038e-24	3.176683e-25
25	7920317	7929116	NM_006413	RPP30		0.831408	4.878954e-28	8.453763e-24	3.381505e-25
26	7920317	8002919	NM_001130089	KARS		0.830312	6.613604e-28	1.145939e-23	4.407458e-25
27	7920317	8041000	NM_007266	GPN1		0.829243	8.878566e-28	1.538389e-23	5.697738e-25
28	7920317	7903619	NM_006513	SARS		0.826736	1.757736e-27	3.045628e-23	1.087724e-24
29	7920317	7955646	NM_001417	EIF4B		0.824657	3.071840e-27	5.322576e-23	1.835371e-24
30	7920317	7939137	NM_006360	EIF3M		0.823146	4.587030e-27	7.947947e-23	2.649316e-24
31	7920317	8171516	NM_002893	RBBP7		0.823090	4.655584e-27	8.066731e-23	2.602171e-24
32	7920317	8107470	NM_002823	PTMA		0.823075	4.673280e-27	8.097393e-23	2.530435e-24
33	7920317	7969935	NM_000123	ERCC5		0.822566	5.344562e-27	9.260522e-23	2.806219e-24
34	7920317	8075798	NM_003753	EIF3D		0.822189	5.901849e-27	1.022613e-22	3.007686e-24
35	7920317	7950644	NM_004549	NDUFC2		0.821973	6.244909e-27	1.082055e-22	3.091587e-24
36	7920317	7993680	BC050464	C16orf62		0.820929	8.205205e-27	1.421716e-22	3.949211e-24
37	7920317	8081867	NM_016589	C3orf1		0.819873	1.079258e-26	1.870030e-22	5.054135e-24
38	7920317	7948908	NR_002564	SNORD26		0.819780	1.105609e-26	1.915688e-22	5.041285e-24
39	7920317	8101376	NM_014933	SEC31A		0.819592	1.160585e-26	2.010946e-22	5.156271e-24
40	7920317	8109462	NM_004779	CNOT8		0.819416	1.214589e-26	2.104519e-22	5.261297e-24
41	7920317	7957746	NM_213611	SLC25A3		0.819086	1.322464e-26	2.291433e-22	5.588861e-24
42	7920317	8164177	NM_001006617	MAPKAP1		0.818892	1.390319e-26	2.409005e-22	5.735726e-24
43	7920317	8158372	NM_003011	SET		0.818602	1.497818e-26	2.595270e-22	6.035511e-24
44	7920317	8144894	NM_018142	INTS10		0.818218	1.652829e-26	2.863857e-22	6.508765e-24
45	7920317	8136631	NM_003143	SSBP1		0.817488	1.991745e-26	3.451096e-22	7.669102e-24
46	7920317	7944375	NM_016146	TRAPPC4		0.817281	2.099758e-26	3.638251e-22	7.909241e-24
47	7920317	8119080	NM_003017	SRSF3		0.815913	2.970936e-26	5.147740e-22	1.095264e-23
48	7920317	8004497	NM_001416	EIF4A1		0.814812	3.919797e-26	6.791832e-22	1.414965e-23
49	7920317	8041149	NM_015131	WDR43		0.814752	3.978670e-26	6.893842e-22	1.406907e-23
50	7920317	8152628	NM_024295	DERL1		0.814331	4.421186e-26	7.660588e-22	1.532118e-23

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.