[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11302	7944375	NM_016146	TRAPPC4		trafficking protein particle complex 4

Fetching correlation data, please wait...
Getting list of correlations for id 11302.
Getting list of p-values for id 11302.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7944375	8042259	NM_005917	MDH1	0.826691	1.779286e-27	3.082969e-23	3.082969e-23
2	7944375	8117888	NM_006325	RAN	0.822021	6.167254e-27	1.068600e-22	5.343001e-23
3	7944375	7920317	NM_004515	ILF2	0.817281	2.099758e-26	3.638251e-22	1.212750e-22
4	7944375	7918345	NM_002790	PSMA5	0.814934	3.801373e-26	6.586639e-22	1.646660e-22
5	7944375	7967149	NM_016237	ANAPC5	0.809686	1.391055e-25	2.410281e-21	4.820563e-22
6	7944375	8002919	NM_001130089	KARS	0.808261	1.964668e-25	3.404181e-21	5.673634e-22
7	7944375	7990211	NM_000520	HEXA	0.803271	6.437219e-25	1.115377e-20	1.593396e-21
8	7944375	8090546	NM_001127192	CNBP	0.801631	9.439123e-25	1.635517e-20	2.044396e-21
9	7944375	8018315	NM_006937	SUMO2	0.796173	3.288297e-24	5.697632e-20	6.330702e-21
10	7944375	8001185	NM_005880	DNAJA2	0.792546	7.382004e-24	1.279080e-19	1.279080e-20
11	7944375	8164067	NM_002799	PSMB7	0.791937	8.443743e-24	1.463047e-19	1.330043e-20
12	7944375	7920492	NM_001098616	C1orf43	0.791385	9.532064e-24	1.651621e-19	1.376351e-20
13	7944375	8132580	NM_006555	YKT6	0.790158	1.246297e-23	2.159459e-19	1.661122e-20
14	7944375	7980463	NM_012245	SNW1	0.785387	3.477829e-23	6.026035e-19	4.304311e-20
15	7944375	8094704	NM_005339	UBE2K	0.784782	3.954095e-23	6.851260e-19	4.567506e-20
16	7944375	7975976	NM_012111	AHSA1	0.784503	4.194618e-23	7.268015e-19	4.542509e-20
17	7944375	8163784	NM_012164	FBXW2	0.783402	5.290426e-23	9.166721e-19	5.392189e-20
18	7944375	8171516	NM_002893	RBBP7	0.780966	8.797548e-23	1.524351e-18	8.468618e-20
19	7944375	8178322	NM_006937	SUMO2	0.780630	9.431988e-23	1.634281e-18	8.601477e-20
20	7944375	7950644	NM_004549	NDUFC2	0.777012	1.981118e-22	3.432683e-18	1.716341e-19
21	7944375	7993872	NM_003366	UQCRC2	0.776857	2.044352e-22	3.542249e-18	1.686785e-19
22	7944375	8042720	NM_006429	CCT7	0.776357	2.262863e-22	3.920864e-18	1.782211e-19
23	7944375	8123148	NM_014161	MRPL18	0.772669	4.741952e-22	8.216381e-18	3.572340e-19
24	7944375	8174636	NM_006937	SUMO2	0.771268	6.258058e-22	1.084334e-17	4.518057e-19
25	7944375	8164177	NM_001006617	MAPKAP1	0.770797	6.866584e-22	1.189773e-17	4.759092e-19
26	7944375	7955890	NM_031157	HNRNPA1	0.770313	7.552655e-22	1.308648e-17	5.033263e-19
27	7944375	8004497	NM_001416	EIF4A1	0.770307	7.561874e-22	1.310246e-17	4.852763e-19
28	7944375	8041000	NM_007266	GPN1	0.766517	1.580444e-21	2.738435e-17	9.780124e-19
29	7944375	8067978	NM_021130	PPIA	0.766105	1.711022e-21	2.964688e-17	1.022306e-18
30	7944375	7977657	NM_031314	HNRNPC	0.765974	1.754562e-21	3.040130e-17	1.013377e-18
31	7944375	7963935	NM_032364	DNAJC14	0.765019	2.107111e-21	3.650990e-17	1.177739e-18
32	7944375	8006392	NM_002815	PSMD11	0.764442	2.352800e-21	4.076697e-17	1.273968e-18
33	7944375	7931187	NM_004725	BUB3	0.762508	3.395685e-21	5.883703e-17	1.782940e-18
34	7944375	8119080	NM_003017	SRSF3	0.762458	3.428333e-21	5.940272e-17	1.747139e-18
35	7944375	8101324	NM_031370	HNRNPD	0.762242	3.571110e-21	6.187663e-17	1.767904e-18
36	7944375	8139421	NM_012412	H2AFV	0.761519	4.091755e-21	7.089784e-17	1.969384e-18
37	7944375	8073192	NM_006003	UQCRFS1	0.760742	4.733670e-21	8.202029e-17	2.216765e-18
38	7944375	7994237	NM_016309	LCMT1	0.759945	5.493920e-21	9.519315e-17	2.505083e-18
39	7944375	8100834	NM_002092	GRSF1	0.759807	5.637676e-21	9.768401e-17	2.504718e-18
40	7944375	8053763	NM_031902	MRPS5	0.759315	6.177949e-21	1.070453e-16	2.676133e-18
41	7944375	7915758	NM_021639	GPBP1L1	0.759242	6.262983e-21	1.085187e-16	2.646798e-18
42	7944375	8023450	NR_024546	TXNL1	0.759002	6.548374e-21	1.134637e-16	2.701516e-18
43	7944375	8080926	NM_006407	ARL6IP5	0.758373	7.359060e-21	1.275104e-16	2.965359e-18
44	7944375	8152628	NM_024295	DERL1	0.758025	7.847469e-21	1.359731e-16	3.090298e-18
45	7944375	7960553	NM_016497	MRPL51	0.757874	8.069185e-21	1.398148e-16	3.106995e-18
46	7944375	7976189	NM_002802	PSMC1	0.757481	8.676527e-21	1.503382e-16	3.268222e-18
47	7944375	8108015	NM_002154	HSPA4	0.757227	9.092248e-21	1.575414e-16	3.351944e-18
48	7944375	7939137	NM_006360	EIF3M	0.757040	9.411378e-21	1.630709e-16	3.397311e-18
49	7944375	8140828	NM_003130	SRI	0.756645	1.011938e-20	1.753385e-16	3.578336e-18
50	7944375	7942553	NM_014752	SPCS2	0.756268	1.084348e-20	1.878849e-16	3.757698e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation