Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17007	7995574	NM_002136	HNRNPA1		heterogeneous nuclear ribonucleoprotein A1

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7995574	8034313	NR_002944	HNRPA1L-2		0.997551	8.096530e-121	1.402886e-116	1.402886e-116
2	7995574	8022814	NM_002136	HNRNPA1		0.996048	3.920425e-110	6.792920e-106	3.396460e-106
3	7995574	7916562	NM_002136	HNRNPA1		0.972098	1.111143e-66	1.925278e-62	6.417593e-63
4	7995574	8059689	NM_005381	NCL		0.930796	8.074179e-47	1.399013e-42	3.497533e-43
5	7995574	7924351	NM_004446	EPRS		0.908194	9.445840e-41	1.636681e-36	3.273361e-37
6	7995574	8022170	NM_001024662	RPL6		0.907281	1.536211e-40	2.661792e-36	4.436320e-37
7	7995574	8101340	NR_003249	HNRPDL		0.904610	6.188626e-40	1.072303e-35	1.531862e-36
8	7995574	8092564	NM_004593	TRA2B		0.904257	7.414414e-40	1.284696e-35	1.605869e-36
9	7995574	7966534	NM_001024662	RPL6		0.901157	3.530322e-39	6.116990e-35	6.796655e-36
10	7995574	7939137	NM_006360	EIF3M		0.900723	4.374565e-39	7.579808e-35	7.579808e-36
11	7995574	7953878	NM_001004419	CLEC2D		0.898811	1.111600e-38	1.926070e-34	1.750972e-35
12	7995574	7955646	NM_001417	EIF4B		0.885362	4.836756e-36	8.380647e-32	6.983872e-33
13	7995574	8114861	NM_020117	LARS		0.885232	5.108746e-36	8.851924e-32	6.809173e-33
14	7995574	8070341	NM_033656	BRWD1		0.884723	6.331990e-36	1.097144e-31	7.836742e-33
15	7995574	8083183	NM_001080415	SR140		0.882586	1.541771e-35	2.671427e-31	1.780951e-32
16	7995574	8027416	NM_003796	C19orf2		0.882451	1.629910e-35	2.824144e-31	1.765090e-32
17	7995574	8078270	NM_002948	RPL15		0.882329	1.713729e-35	2.969379e-31	1.746693e-32
18	7995574	8080991	NM_194247	HNRNPA3		0.881913	2.033462e-35	3.523380e-31	1.957433e-32
19	7995574	7974066	NM_002687	PNN		0.881083	2.853042e-35	4.943465e-31	2.601824e-32
20	7995574	8046590	NM_194247	HNRNPA3		0.879869	4.663398e-35	8.080270e-31	4.040135e-32
21	7995574	7930380	NM_016824	ADD3		0.879175	6.158949e-35	1.067161e-30	5.081720e-32
22	7995574	8113157	NM_014639	TTC37		0.878934	6.782455e-35	1.175196e-30	5.341800e-32
23	7995574	7925565	NM_031844	HNRNPU		0.878585	7.795288e-35	1.350690e-30	5.872563e-32
24	7995574	7902382	NM_004582	RABGGTB		0.878129	9.341723e-35	1.618640e-30	6.744334e-32
25	7995574	7903239	NM_000028	AGL		0.877794	1.066733e-34	1.848328e-30	7.393312e-32
26	7995574	8055060	NM_018383	WDR33		0.877463	1.215365e-34	2.105862e-30	8.099470e-32
27	7995574	8039010	NM_018260	ZNF701		0.876684	1.649865e-34	2.858721e-30	1.058786e-31
28	7995574	8103106	NM_006726	LRBA		0.876201	1.992429e-34	3.452281e-30	1.232958e-31
29	7995574	8051882	NM_133259	LRPPRC		0.875961	2.187822e-34	3.790839e-30	1.307186e-31
30	7995574	8047518	NM_015934	NOP58		0.874181	4.348297e-34	7.534294e-30	2.511431e-31
31	7995574	8063283	NM_001316	CSE1L		0.873784	5.061346e-34	8.769795e-30	2.828966e-31
32	7995574	7969935	NM_000123	ERCC5		0.873329	6.018990e-34	1.042910e-29	3.259095e-31
33	7995574	8152465	NM_003756	EIF3H		0.873301	6.082305e-34	1.053881e-29	3.193578e-31
34	7995574	8039947	NM_006625	SRSF10		0.873096	6.576415e-34	1.139495e-29	3.351457e-31
35	7995574	7925364	NM_018072	HEATR1		0.872000	9.946534e-34	1.723436e-29	4.924103e-31
36	7995574	7924190	NM_144567	ANGEL2		0.870813	1.550613e-33	2.686747e-29	7.463186e-31
37	7995574	8158372	NM_003011	SET		0.870715	1.608480e-33	2.787014e-29	7.532470e-31
38	7995574	7971920	NM_194247	HNRNPA3		0.870259	1.905114e-33	3.300991e-29	8.686819e-31
39	7995574	7917103	NM_015534	ZZZ3		0.869805	2.253083e-33	3.903916e-29	1.001004e-30
40	7995574	8044745	NM_006773	DDX18		0.869584	2.445193e-33	4.236786e-29	1.059196e-30
41	7995574	8112892	CR608596	LOC644037		0.869528	2.495498e-33	4.323949e-29	1.054622e-30
42	7995574	8046975	NM_032168	WDR75		0.869402	2.613845e-33	4.529010e-29	1.078336e-30
43	7995574	8154531	NM_017925	DENND4C		0.869363	2.652422e-33	4.595852e-29	1.068803e-30
44	7995574	8047097	NM_014905	GLS		0.869239	2.776063e-33	4.810084e-29	1.093201e-30
45	7995574	8051622	NM_001031684	SRSF7		0.869039	2.987247e-33	5.176002e-29	1.150223e-30
46	7995574	8137240	NM_153236	GIMAP7		0.868427	3.736273e-33	6.473840e-29	1.407356e-30
47	7995574	7969881	NM_003291	TPP2		0.867889	4.546251e-33	7.877289e-29	1.676019e-30
48	7995574	7903519	NM_018061	PRPF38B		0.867578	5.089471e-33	8.818527e-29	1.837193e-30
49	7995574	8040985	NM_032434	ZNF512		0.867516	5.203930e-33	9.016849e-29	1.840173e-30
50	7995574	7989253	NM_024755	SLTM		0.867036	6.190577e-33	1.072641e-28	2.145282e-30

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.