[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15954	8165309	NM_003792	EDF1		endothelial differentiation-related factor 1

Fetching correlation data, please wait...
Getting list of correlations for id 15954.
Getting list of p-values for id 15954.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.154 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165309	8028514	NM_013234	EIF3K	0.873016	6.778810e-34	1.174564e-29	1.174564e-29
2	8165309	7899737	NM_003757	EIF3I	0.855156	3.706276e-31	6.421865e-27	3.210932e-27
3	8165309	8043100	NM_021103	TMSB10	0.843325	1.540872e-29	2.669869e-25	8.899562e-26
4	8165309	8029129	NM_001022	RPS19	0.834450	2.073468e-28	3.592698e-24	8.981744e-25
5	8165309	8015712	NM_001040431	CCDC56	0.832613	3.483283e-28	6.035485e-24	1.207097e-24
6	8165309	7940688	NM_002696	POLR2G	0.829168	9.065223e-28	1.570731e-23	2.617885e-24
7	8165309	8148270	NM_005005	NDUFB9	0.819346	1.236809e-26	2.143020e-22	3.061456e-23
8	8165309	8019273	NM_005782	THOC4	0.813634	5.261862e-26	9.117228e-22	1.139653e-22
9	8165309	7912670	NM_006004	UQCRH	0.812903	6.309869e-26	1.093311e-21	1.214790e-22
10	8165309	8119648	NM_057161	KLHDC3	0.810373	1.176403e-25	2.038353e-21	2.038353e-22
11	8165309	7991386	NM_006384	CIB1	0.808560	1.827702e-25	3.166860e-21	2.878964e-22
12	8165309	7929243	NM_017838	NHP2	0.808533	1.839823e-25	3.187862e-21	2.656551e-22
13	8165309	8039939	NM_017971	MRPL20	0.804063	5.344482e-25	9.260384e-21	7.123372e-22
14	8165309	7911559	NM_017971	MRPL20	0.804063	5.344482e-25	9.260384e-21	6.614560e-22
15	8165309	7920271	NM_019554	S100A4	0.801870	8.928709e-25	1.547077e-20	1.031385e-21
16	8165309	8009227	NM_002805	PSMC5	0.799060	1.707474e-24	2.958539e-20	1.849087e-21
17	8165309	7913256	NM_005216	DDOST	0.798415	1.978363e-24	3.427909e-20	2.016417e-21
18	8165309	8002133	NM_002801	PSMB10	0.793492	5.988031e-24	1.037546e-19	5.764145e-21
19	8165309	8115158	NM_001025071	RPS14	0.792123	8.104315e-24	1.404235e-19	7.390709e-21
20	8165309	8030007	NM_001425	EMP3	0.791704	8.887952e-24	1.540015e-19	7.700077e-21
21	8165309	8013348	NM_002952	RPS2	0.791199	9.929050e-24	1.720407e-19	8.192412e-21
22	8165309	8169659	NM_004541	NDUFA1	0.790409	1.180118e-23	2.044790e-19	9.294501e-21
23	8165309	7978201	NM_006156	NEDD8	0.789916	1.313959e-23	2.276697e-19	9.898682e-21
24	8165309	8074969	NM_001355	DDT	0.786790	2.579214e-23	4.469004e-19	1.862085e-20
25	8165309	7998655	NM_002952	RPS2	0.786655	2.654725e-23	4.599842e-19	1.839937e-20
26	8165309	8116020	NM_006816	LMAN2	0.785777	3.201690e-23	5.547568e-19	2.133680e-20
27	8165309	7941927	NM_003977	AIP	0.785658	3.283599e-23	5.689493e-19	2.107220e-20
28	8165309	7939068	NM_001028	RPS25	0.783289	5.417064e-23	9.386146e-19	3.352195e-20
29	8165309	8073343	CR605850		0.780355	9.983980e-23	1.729924e-18	5.965256e-20
30	8165309	8089249	NM_000986	RPL24	0.776941	2.009935e-22	3.482615e-18	1.160872e-19
31	8165309	8064502	NM_003091	SNRPB	0.775249	2.829863e-22	4.903304e-18	1.581711e-19
32	8165309	8073645	NM_015380	SAMM50	0.774025	3.618683e-22	6.270092e-18	1.959404e-19
33	8165309	8134552	NM_005720	ARPC1B	0.772817	4.604946e-22	7.978991e-18	2.417876e-19
34	8165309	8071737	NM_002415	MIF	0.769340	9.138498e-22	1.583427e-17	4.657140e-19
35	8165309	8019772	NM_005782	THOC4	0.768578	1.060303e-21	1.837187e-17	5.249105e-19
36	8165309	8019046	NM_014740	EIF4A3	0.767957	1.196343e-21	2.072903e-17	5.758064e-19
37	8165309	8172905	NM_004493	HSD17B10	0.764001	2.558619e-21	4.433318e-17	1.198194e-18
38	8165309	8104298	NM_004553	NDUFS6	0.763895	2.610777e-21	4.523694e-17	1.190446e-18
39	8165309	7952056	NM_000732	CD3D	0.763670	2.725242e-21	4.722027e-17	1.210776e-18
40	8165309	8076209	NM_000967	RPL3	0.763460	2.836030e-21	4.913989e-17	1.228497e-18
41	8165309	8172358	NM_153477	UXT	0.762876	3.167977e-21	5.489154e-17	1.338818e-18
42	8165309	8003322	NM_000101	CYBA	0.762799	3.214444e-21	5.569668e-17	1.326111e-18
43	8165309	7942586	NM_001005	RPS3	0.761566	4.055865e-21	7.027597e-17	1.634325e-18
44	8165309	8000323	NM_005003	NDUFAB1	0.761027	4.488098e-21	7.776527e-17	1.767393e-18
45	8165309	8085026	NM_000996	RPL35A	0.760290	5.151723e-21	8.926390e-17	1.983642e-18
46	8165309	7997702	NM_001861	COX4I1	0.760072	5.365215e-21	9.296307e-17	2.020936e-18
47	8165309	7905986	NM_002004	FDPS	0.754707	1.441945e-20	2.498458e-16	5.315868e-18
48	8165309	8049180	NM_004846	EIF4E2	0.753578	1.769606e-20	3.066196e-16	6.387908e-18
49	8165309	8084423	NM_002808	PSMD2	0.752836	2.023397e-20	3.505939e-16	7.154978e-18
50	8165309	8029958	NM_015710	GLTSCR2	0.752641	2.095817e-20	3.631422e-16	7.262844e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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