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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 13256.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13256 8019772 NM_005782 THOC4 link to infopage THO complex 4

Fetching correlation data, please wait...
Getting list of correlations for id 13256.
Getting list of p-values for id 13256.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.087 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8019772 8019273 NM_005782 THOC4 link to infopage 0.956991 3.616998e-57 6.267172e-53 6.267172e-53
2 8019772 8116020 NM_006816 LMAN2 link to infopage 0.773491 4.025643e-22 6.975232e-18 3.487616e-18
3 8019772 8165309 NM_003792 EDF1 link to infopage 0.768578 1.060303e-21 1.837187e-17 6.123956e-18
4 8019772 8169659 NM_004541 NDUFA1 link to infopage 0.752273 2.239020e-20 3.879549e-16 9.698873e-17
5 8019772 8064502 NM_003091 SNRPB link to infopage 0.750128 3.286563e-20 5.694627e-16 1.138925e-16
6 8019772 7949792 NM_005608 PTPRCAP link to infopage 0.749334 3.783919e-20 6.556396e-16 1.092733e-16
7 8019772 7965480 NM_002629 PGAM1 link to infopage 0.745686 7.186318e-20 1.245173e-15 1.778819e-16
8 8019772 8087100 NM_003365 UQCRC1 link to infopage 0.743353 1.076835e-19 1.865831e-15 2.332289e-16
9 8019772 7964466 NM_006400 DCTN2 link to infopage 0.741437 1.496249e-19 2.592550e-15 2.880611e-16
10 8019772 7929624 NM_002629 PGAM1 link to infopage 0.740407 1.783485e-19 3.090244e-15 3.090244e-16
11 8019772 8171111 NM_001636 SLC25A6 link to infopage 0.739910 1.940430e-19 3.362183e-15 3.056530e-16
12 8019772 8177003 NM_001636 SLC25A6 link to infopage 0.739910 1.940430e-19 3.362183e-15 2.801819e-16
13 8019772 8070811 NM_006936 SUMO3 link to infopage 0.737787 2.777557e-19 4.812672e-15 3.702056e-16
14 8019772 8009227 NM_002805 PSMC5 link to infopage 0.734020 5.203440e-19 9.016001e-15 6.440001e-16
15 8019772 7958152 NM_002629 PGAM1 link to infopage 0.732816 6.345579e-19 1.099498e-14 7.329990e-16
16 8019772 8011759 NM_005022 PFN1 link to infopage 0.731438 7.952286e-19 1.377893e-14 8.611829e-16
17 8019772 8173729 NM_001029891 PGAM4 link to infopage 0.730298 9.576459e-19 1.659313e-14 9.760665e-16
18 8019772 8176282 NM_001029891 PGAM4 link to infopage 0.730298 9.576459e-19 1.659313e-14 9.218406e-16
19 8019772 7940688 NM_002696 POLR2G link to infopage 0.729728 1.050417e-18 1.820057e-14 9.579247e-16
20 8019772 8002133 NM_002801 PSMB10 link to infopage 0.728989 1.183889e-18 2.051324e-14 1.025662e-15
21 8019772 8110392 NM_017510 TMED9 link to infopage 0.726067 1.892459e-18 3.279063e-14 1.561459e-15
22 8019772 8159609 NM_003731 SSNA1 link to infopage 0.725288 2.142222e-18 3.711829e-14 1.687195e-15
23 8019772 7913256 NM_005216 DDOST link to infopage 0.723564 2.814702e-18 4.877035e-14 2.120450e-15
24 8019772 7897404 NM_007262 PARK7 link to infopage 0.722929 3.110733e-18 5.389967e-14 2.245819e-15
25 8019772 7920271 NM_019554 S100A4 link to infopage 0.715458 9.889332e-18 1.713525e-13 6.854099e-15
26 8019772 8028514 NM_013234 EIF3K link to infopage 0.715222 1.024992e-17 1.776003e-13 6.830781e-15
27 8019772 8039939 NM_017971 MRPL20 link to infopage 0.712014 1.664616e-17 2.884279e-13 1.068252e-14
28 8019772 7911559 NM_017971 MRPL20 link to infopage 0.712014 1.664616e-17 2.884279e-13 1.030100e-14
29 8019772 8019250 NM_000918 P4HB link to infopage 0.711082 1.914074e-17 3.316516e-13 1.143626e-14
30 8019772 8029129 NM_001022 RPS19 link to infopage 0.710015 2.244126e-17 3.888398e-13 1.296133e-14
31 8019772 8043718 NM_001862 COX5B link to infopage 0.706682 3.672735e-17 6.363748e-13 2.052822e-14
32 8019772 7973564 NM_176783 PSME1 link to infopage 0.706373 3.842955e-17 6.658689e-13 2.080840e-14
33 8019772 7899737 NM_003757 EIF3I link to infopage 0.705013 4.687934e-17 8.122784e-13 2.461450e-14
34 8019772 8134552 NM_005720 ARPC1B link to infopage 0.702570 6.680917e-17 1.157603e-12 3.404713e-14
35 8019772 8104298 NM_004553 NDUFS6 link to infopage 0.702184 7.063287e-17 1.223856e-12 3.496731e-14
36 8019772 8172905 NM_004493 HSD17B10 link to infopage 0.701324 7.992946e-17 1.384938e-12 3.847049e-14
37 8019772 7991374 NM_002168 IDH2 link to infopage 0.700782 8.638902e-17 1.496863e-12 4.045575e-14
38 8019772 8043100 NM_021103 TMSB10 link to infopage 0.700615 8.848434e-17 1.533168e-12 4.034653e-14
39 8019772 7941478 NM_005146 SART1 link to infopage 0.700056 9.584476e-17 1.660702e-12 4.258211e-14
40 8019772 8019762 link to infopage 0.699938 9.746839e-17 1.688835e-12 4.222087e-14
41 8019772 7997702 NM_001861 COX4I1 link to infopage 0.695577 1.806143e-16 3.129504e-12 7.632936e-14
42 8019772 8177717 NM_018950 HLA-F link to infopage 0.695344 1.866080e-16 3.233356e-12 7.698467e-14
43 8019772 8119648 NM_057161 KLHDC3 link to infopage 0.694973 1.965671e-16 3.405919e-12 7.920742e-14
44 8019772 7948864 NM_003164 STX5 link to infopage 0.693085 2.556956e-16 4.430437e-12 1.006918e-13
45 8019772 8072876 NM_002305 LGALS1 link to infopage 0.692844 2.643801e-16 4.580913e-12 1.017981e-13
46 8019772 7929243 NM_017838 NHP2 link to infopage 0.691114 3.357664e-16 5.817824e-12 1.264744e-13
47 8019772 8032149 NM_002695 POLR2E link to infopage 0.690994 3.413238e-16 5.914117e-12 1.258323e-13
48 8019772 7989619 NM_000942 PPIB link to infopage 0.690380 3.713817e-16 6.434930e-12 1.340610e-13
49 8019772 7941927 NM_003977 AIP link to infopage 0.690103 3.857889e-16 6.684564e-12 1.364197e-13
50 8019772 8049784 NM_002712 PPP1R7 link to infopage 0.687430 5.554596e-16 9.624448e-12 1.924890e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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