[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
13256	8019772	NM_005782	THOC4		THO complex 4
13608	8019273	NM_005782	THOC4		THO complex 4

Fetching correlation data, please wait...
Getting list of correlations for id 13256.
Getting list of p-values for id 13256.
1 of 2 done.
Getting list of correlations for id 13608.
Getting list of p-values for id 13608.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.229 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8019772	8019273	NM_005782	THOC4	0.956991	3.616998e-57	1.253434e-52	1.253434e-52
2	8019273	8019772	NM_005782	THOC4	0.956991	3.616998e-57	1.253434e-52	6.267172e-53
3	8019273	8165309	NM_003792	EDF1	0.813634	5.261862e-26	1.823446e-21	6.078152e-22
4	8019273	7949792	NM_005608	PTPRCAP	0.777614	1.752694e-22	6.073785e-18	1.518446e-18
5	8019273	7913256	NM_005216	DDOST	0.774166	3.517559e-22	1.218975e-17	2.437950e-18
6	8019772	8116020	NM_006816	LMAN2	0.773491	4.025643e-22	1.395046e-17	2.325077e-18
7	8019772	8165309	NM_003792	EDF1	0.768578	1.060303e-21	3.674374e-17	5.249105e-18
8	8019273	8087100	NM_003365	UQCRC1	0.764057	2.531890e-21	8.774013e-17	1.096752e-17
9	8019273	8116020	NM_006816	LMAN2	0.759244	6.260118e-21	2.169381e-16	2.410424e-17
10	8019772	8169659	NM_004541	NDUFA1	0.752273	2.239020e-20	7.759098e-16	7.759098e-17
11	8019273	8177003	NM_001636	SLC25A6	0.752143	2.292029e-20	7.942799e-16	7.220726e-17
12	8019273	8171111	NM_001636	SLC25A6	0.752143	2.292029e-20	7.942799e-16	6.618999e-17
13	8019772	8064502	NM_003091	SNRPB	0.750128	3.286563e-20	1.138925e-15	8.760965e-17
14	8019772	7949792	NM_005608	PTPRCAP	0.749334	3.783919e-20	1.311279e-15	9.366280e-17
15	8019273	8028514	NM_013234	EIF3K	0.749279	3.821196e-20	1.324197e-15	8.827983e-17
16	8019273	7899737	NM_003757	EIF3I	0.748668	4.257744e-20	1.475479e-15	9.221742e-17
17	8019273	8070811	NM_006936	SUMO3	0.746379	6.366679e-20	2.206309e-15	1.297829e-16
18	8019772	7965480	NM_002629	PGAM1	0.745686	7.186318e-20	2.490347e-15	1.383526e-16
19	8019772	8087100	NM_003365	UQCRC1	0.743353	1.076835e-19	3.731662e-15	1.964033e-16
20	8019772	7964466	NM_006400	DCTN2	0.741437	1.496249e-19	5.185100e-15	2.592550e-16
21	8019772	7929624	NM_002629	PGAM1	0.740407	1.783485e-19	6.180488e-15	2.943090e-16
22	8019772	8171111	NM_001636	SLC25A6	0.739910	1.940430e-19	6.724366e-15	3.056530e-16
23	8019772	8177003	NM_001636	SLC25A6	0.739910	1.940430e-19	6.724366e-15	2.923637e-16
24	8019273	7991374	NM_002168	IDH2	0.738958	2.280167e-19	7.901691e-15	3.292371e-16
25	8019772	8070811	NM_006936	SUMO3	0.737787	2.777557e-19	9.625345e-15	3.850138e-16
26	8019273	8032149	NM_002695	POLR2E	0.736325	3.548053e-19	1.229542e-14	4.729009e-16
27	8019273	8002133	NM_002801	PSMB10	0.735471	4.091013e-19	1.417700e-14	5.250740e-16
28	8019772	8009227	NM_002805	PSMC5	0.734020	5.203440e-19	1.803200e-14	6.440001e-16
29	8019273	8119648	NM_057161	KLHDC3	0.733684	5.499895e-19	1.905934e-14	6.572185e-16
30	8019772	7958152	NM_002629	PGAM1	0.732816	6.345579e-19	2.198997e-14	7.329990e-16
31	8019772	8011759	NM_005022	PFN1	0.731438	7.952286e-19	2.755785e-14	8.889630e-16
32	8019273	7929243	NM_017838	NHP2	0.730772	8.865624e-19	3.072293e-14	9.600916e-16
33	8019772	8176282	NM_001029891	PGAM4	0.730298	9.576459e-19	3.318626e-14	1.005644e-15
34	8019772	8173729	NM_001029891	PGAM4	0.730298	9.576459e-19	3.318626e-14	9.760665e-16
35	8019772	7940688	NM_002696	POLR2G	0.729728	1.050417e-18	3.640114e-14	1.040033e-15
36	8019772	8002133	NM_002801	PSMB10	0.728989	1.183889e-18	4.102648e-14	1.139624e-15
37	8019273	8159609	NM_003731	SSNA1	0.728365	1.309209e-18	4.536931e-14	1.226198e-15
38	8019273	7929624	NM_002629	PGAM1	0.728049	1.377522e-18	4.773664e-14	1.256227e-15
39	8019273	8064502	NM_003091	SNRPB	0.726860	1.667194e-18	5.777495e-14	1.481409e-15
40	8019273	8154727	AF091236	LOC138412	0.726567	1.747171e-18	6.054646e-14	1.513662e-15
41	8019772	8110392	NM_017510	TMED9	0.726067	1.892459e-18	6.558127e-14	1.599543e-15
42	8019772	8159609	NM_003731	SSNA1	0.725288	2.142222e-18	7.423657e-14	1.767537e-15
43	8019273	8172905	NM_004493	HSD17B10	0.723908	2.665826e-18	9.238152e-14	2.148407e-15
44	8019273	7941927	NM_003977	AIP	0.723718	2.747031e-18	9.519562e-14	2.163537e-15
45	8019772	7913256	NM_005216	DDOST	0.723564	2.814702e-18	9.754069e-14	2.167571e-15
46	8019772	7897404	NM_007262	PARK7	0.722929	3.110733e-18	1.077993e-13	2.343464e-15
47	8019273	8149638	NM_003974	DOK2	0.722807	3.171049e-18	1.098895e-13	2.338075e-15
48	8019273	7911559	NM_017971	MRPL20	0.722415	3.372527e-18	1.168716e-13	2.434824e-15
49	8019273	8039939	NM_017971	MRPL20	0.722415	3.372527e-18	1.168716e-13	2.385134e-15
50	8019273	8071737	NM_002415	MIF	0.722320	3.423221e-18	1.186283e-13	2.372566e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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