[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 15884.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15884	7965480	NM_002629	PGAM1		phosphoglycerate mutase 1 (brain)

Fetching correlation data, please wait...
Getting list of correlations for id 15884.
Getting list of p-values for id 15884.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.712 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7965480	7929624	NM_002629	PGAM1	0.994159	2.029587e-101	3.516666e-97	3.516666e-97
2	7965480	7958152	NM_002629	PGAM1	0.992582	4.326697e-96	7.496868e-92	3.748434e-92
3	7965480	8176282	NM_001029891	PGAM4	0.979280	2.936953e-73	5.088858e-69	1.696286e-69
4	7965480	8173729	NM_001029891	PGAM4	0.979280	2.936953e-73	5.088858e-69	1.272214e-69
5	7965480	8011759	NM_005022	PFN1	0.842472	1.992271e-29	3.452007e-25	6.904014e-26
6	7965480	7964466	NM_006400	DCTN2	0.830077	7.057648e-28	1.222879e-23	2.038131e-24
7	7965480	8134552	NM_005720	ARPC1B	0.826546	1.850616e-27	3.206562e-23	4.580803e-24
8	7965480	8116020	NM_006816	LMAN2	0.825098	2.730422e-27	4.731002e-23	5.913753e-24
9	7965480	7904974	NR_003242	C1orf152	0.820559	9.033565e-27	1.565246e-22	1.739162e-23
10	7965480	8019762			0.803415	6.223085e-25	1.078274e-20	1.078274e-21
11	7965480	7978208	NM_012461	TINF2	0.801440	9.867376e-25	1.709720e-20	1.554291e-21
12	7965480	8019250	NM_000918	P4HB	0.795264	4.033890e-24	6.989521e-20	5.824601e-21
13	7965480	8110803	NM_030782	CLPTM1L	0.789082	1.574749e-23	2.728567e-19	2.098898e-20
14	7965480	7920271	NM_019554	S100A4	0.788167	1.918687e-23	3.324509e-19	2.374649e-20
15	7965480	8030007	NM_001425	EMP3	0.787917	2.025114e-23	3.508914e-19	2.339276e-20
16	7965480	7978201	NM_006156	NEDD8	0.786571	2.702665e-23	4.682907e-19	2.926817e-20
17	7965480	8099340	NM_017491	WDR1	0.786042	3.025521e-23	5.242320e-19	3.083718e-20
18	7965480	7989619	NM_000942	PPIB	0.785125	3.676981e-23	6.371104e-19	3.539502e-20
19	7965480	7990211	NM_000520	HEXA	0.784642	4.073113e-23	7.057483e-19	3.714465e-20
20	7965480	8064502	NM_003091	SNRPB	0.782762	6.050685e-23	1.048402e-18	5.242011e-20
21	7965480	7913256	NM_005216	DDOST	0.781814	7.375507e-23	1.277954e-18	6.085495e-20
22	7965480	7926368	NM_003380	VIM	0.780269	1.016315e-22	1.760968e-18	8.004401e-20
23	7965480	7949496	NM_005507	CFL1	0.778772	1.383181e-22	2.396638e-18	1.042017e-19
24	7965480	8140828	NM_003130	SRI	0.776634	2.139182e-22	3.706561e-18	1.544401e-19
25	7965480	8073192	NM_006003	UQCRFS1	0.775677	2.595950e-22	4.498003e-18	1.799201e-19
26	7965480	8179019	NM_018950	HLA-F	0.774140	3.536375e-22	6.127478e-18	2.356722e-19
27	7965480	8177717	NM_018950	HLA-F	0.772456	4.946714e-22	8.571172e-18	3.174508e-19
28	7965480	7973564	NM_176783	PSME1	0.772147	5.259265e-22	9.112729e-18	3.254546e-19
29	7965480	8025076	NM_005428	VAV1	0.767161	1.395739e-21	2.418397e-17	8.339300e-19
30	7965480	7969372	ENST00000362412		-0.766447	1.601934e-21	2.775671e-17	9.252237e-19
31	7965480	7940688	NM_002696	POLR2G	0.766136	1.700772e-21	2.946928e-17	9.506219e-19
32	7965480	8028514	NM_013234	EIF3K	0.764147	2.488666e-21	4.312112e-17	1.347535e-18
33	7965480	8104449	NM_012073	CCT5	0.762988	3.101539e-21	5.374037e-17	1.628496e-18
34	7965480	7990151	NM_182470	PKM2	0.762370	3.485597e-21	6.039493e-17	1.776322e-18
35	7965480	8150112	NM_000637	GSR	0.761800	3.881013e-21	6.724631e-17	1.921323e-18
36	7965480	8132592	NM_002541	OGDH	0.761770	3.903242e-21	6.763147e-17	1.878652e-18
37	7965480	8132580	NM_006555	YKT6	0.761626	4.010593e-21	6.949154e-17	1.878150e-18
38	7965480	8117760	NM_001098479	HLA-F	0.760591	4.869995e-21	8.438241e-17	2.220590e-18
39	7965480	7948864	NM_003164	STX5	0.759379	6.105883e-21	1.057966e-16	2.712734e-18
40	7965480	8119648	NM_057161	KLHDC3	0.758107	7.729019e-21	1.339207e-16	3.348018e-18
41	7965480	8009932	NM_013260	SAP30BP	0.758045	7.819130e-21	1.354821e-16	3.304441e-18
42	7965480	7994756	NM_002720	PPP4C	0.757807	8.170325e-21	1.415672e-16	3.370648e-18
43	7965480	8004030	NM_015528	RNF167	0.756898	9.659814e-21	1.673756e-16	3.892456e-18
44	7965480	8138773	NM_022170	EIF4H	0.756495	1.040074e-20	1.802137e-16	4.095766e-18
45	7965480	7982531	NM_006305	ANP32A	0.756290	1.079954e-20	1.871236e-16	4.158301e-18
46	7965480	7897404	NM_007262	PARK7	0.754135	1.599799e-20	2.771972e-16	6.026025e-18
47	7965480	8160914	NM_007126	VCP	0.752552	2.129566e-20	3.689899e-16	7.850849e-18
48	7965480	7911619	NM_002074	GNB1	0.751919	2.386020e-20	4.134257e-16	8.613035e-18
49	7965480	7919564	ENST00000365297		-0.751708	2.478446e-20	4.294404e-16	8.764090e-18
50	7965480	8006392	NM_002815	PSMD11	0.750642	2.998937e-20	5.196258e-16	1.039252e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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