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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
9349 7964466 NM_006400 DCTN2 link to infopage dynactin 2 (p50)

Fetching correlation data, please wait...
Getting list of correlations for id 9349.
Getting list of p-values for id 9349.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.369 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7964466 7965480 NM_002629 PGAM1 link to infopage 0.830077 7.057648e-28 1.222879e-23 1.222879e-23
2 7964466 7958152 NM_002629 PGAM1 link to infopage 0.823347 4.349289e-27 7.536013e-23 3.768007e-23
3 7964466 7929624 NM_002629 PGAM1 link to infopage 0.820849 8.378477e-27 1.451739e-22 4.839129e-23
4 7964466 8116020 NM_006816 LMAN2 link to infopage 0.819614 1.154022e-26 1.999573e-22 4.998933e-23
5 7964466 8173729 NM_001029891 PGAM4 link to infopage 0.817077 2.211654e-26 3.832132e-22 7.664265e-23
6 7964466 8176282 NM_001029891 PGAM4 link to infopage 0.817077 2.211654e-26 3.832132e-22 6.386887e-23
7 7964466 8073192 NM_006003 UQCRFS1 link to infopage 0.817015 2.246870e-26 3.893151e-22 5.561645e-23
8 7964466 7969372 ENST00000362412 link to infopage -0.802023 8.616513e-25 1.492983e-20 1.866229e-21
9 7964466 8134552 NM_005720 ARPC1B link to infopage 0.798105 2.123421e-24 3.679252e-20 4.088058e-21
10 7964466 8019250 NM_000918 P4HB link to infopage 0.785378 3.484717e-23 6.037969e-19 6.037969e-20
11 7964466 8009227 NM_002805 PSMC5 link to infopage 0.784247 4.427468e-23 7.671474e-19 6.974067e-20
12 7964466 7978201 NM_006156 NEDD8 link to infopage 0.783129 5.602367e-23 9.707221e-19 8.089351e-20
13 7964466 7897404 NM_007262 PARK7 link to infopage 0.781993 7.105463e-23 1.231164e-18 9.470490e-20
14 7964466 8003939 NM_003963 TM4SF5 link to infopage -0.779930 1.089935e-22 1.888530e-18 1.348950e-19
15 7964466 7989619 NM_000942 PPIB link to infopage 0.778480 1.468404e-22 2.544303e-18 1.696202e-19
16 7964466 8132580 NM_006555 YKT6 link to infopage 0.778237 1.543376e-22 2.674208e-18 1.671380e-19
17 7964466 8006392 NM_002815 PSMD11 link to infopage 0.775051 2.945051e-22 5.102891e-18 3.001700e-19
18 7964466 8009932 NM_013260 SAP30BP link to infopage 0.772763 4.654333e-22 8.064563e-18 4.480313e-19
19 7964466 7975976 NM_012111 AHSA1 link to infopage 0.772209 5.195267e-22 9.001840e-18 4.737810e-19
20 7964466 8119648 NM_057161 KLHDC3 link to infopage 0.771938 5.482209e-22 9.499024e-18 4.749512e-19
21 7964466 7919564 ENST00000365297 link to infopage -0.770624 7.105497e-22 1.231170e-17 5.862712e-19
22 7964466 8019762 link to infopage 0.770479 7.310230e-22 1.266644e-17 5.757471e-19
23 7964466 7905355 NM_024041 SCNM1 link to infopage 0.770237 7.665830e-22 1.328258e-17 5.775037e-19
24 7964466 7978208 NM_012461 TINF2 link to infopage 0.770227 7.681233e-22 1.330927e-17 5.545530e-19
25 7964466 8028514 NM_013234 EIF3K link to infopage 0.769954 8.104800e-22 1.404319e-17 5.617275e-19
26 7964466 8104449 NM_012073 CCT5 link to infopage 0.768079 1.168270e-21 2.024262e-17 7.785621e-19
27 7964466 7940688 NM_002696 POLR2G link to infopage 0.767248 1.372564e-21 2.378242e-17 8.808304e-19
28 7964466 7913256 NM_005216 DDOST link to infopage 0.766719 1.520104e-21 2.633885e-17 9.406730e-19
29 7964466 8140828 NM_003130 SRI link to infopage 0.765599 1.885577e-21 3.267139e-17 1.126600e-18
30 7964466 8139706 NM_014302 SEC61G link to infopage 0.764719 2.231627e-21 3.866741e-17 1.288914e-18
31 7964466 8064522 NM_174856 IDH3B link to infopage 0.763447 2.842701e-21 4.925548e-17 1.588886e-18
32 7964466 7948864 NM_003164 STX5 link to infopage 0.761790 3.888541e-21 6.737676e-17 2.105524e-18
33 7964466 7987172 NM_020154 C15orf24 link to infopage 0.760147 5.291520e-21 9.168617e-17 2.778369e-18
34 7964466 8151613 AF495523 REXO1L1 link to infopage -0.759921 5.519197e-21 9.563112e-17 2.812680e-18
35 7964466 8151625 AF495523 REXO1L1 link to infopage -0.759921 5.519197e-21 9.563112e-17 2.732318e-18
36 7964466 8151621 AF495523 REXO1L1 link to infopage -0.759921 5.519197e-21 9.563112e-17 2.656420e-18
37 7964466 8151617 AF495523 REXO1L1 link to infopage -0.759921 5.519197e-21 9.563112e-17 2.584625e-18
38 7964466 8151605 AF495523 REXO1L1 link to infopage -0.759921 5.519197e-21 9.563112e-17 2.516608e-18
39 7964466 7934367 NM_004034 ANXA7 link to infopage 0.759859 5.583517e-21 9.674561e-17 2.480657e-18
40 7964466 7912928 NM_003000 SDHB link to infopage 0.759327 6.164122e-21 1.068057e-16 2.670143e-18
41 7964466 8138773 NM_022170 EIF4H link to infopage 0.758256 7.519502e-21 1.302904e-16 3.177815e-18
42 7964466 8037732 NM_001029861 NANOS2 link to infopage -0.757651 8.408129e-21 1.456877e-16 3.468754e-18
43 7964466 8122705 NM_005389 PCMT1 link to infopage 0.757493 8.657977e-21 1.500168e-16 3.488762e-18
44 7964466 8169659 NM_004541 NDUFA1 link to infopage 0.756839 9.764188e-21 1.691841e-16 3.845093e-18
45 7964466 8093314 NM_004547 NDUFB4 link to infopage 0.756523 1.034808e-20 1.793011e-16 3.984470e-18
46 7964466 8081945 NM_004547 NDUFB4 link to infopage 0.756523 1.034808e-20 1.793011e-16 3.897851e-18
47 7964466 8039939 NM_017971 MRPL20 link to infopage 0.755936 1.152366e-20 1.996705e-16 4.248309e-18
48 7964466 7911559 NM_017971 MRPL20 link to infopage 0.755936 1.152366e-20 1.996705e-16 4.159803e-18
49 7964466 8099340 NM_017491 WDR1 link to infopage 0.755579 1.230033e-20 2.131279e-16 4.349549e-18
50 7964466 7933164 NM_004966 HNRNPF link to infopage 0.755298 1.294871e-20 2.243623e-16 4.487245e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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