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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
11254 7912928 NM_003000 SDHB link to infopage succinate dehydrogenase complex, subunit B, iron sulfur (Ip)

Fetching correlation data, please wait...
Getting list of correlations for id 11254.
Getting list of p-values for id 11254.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.160 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7912928 8106252 NM_000521 HEXB link to infopage 0.783899 4.765220e-23 8.256697e-19 8.256697e-19
2 7912928 8122705 NM_005389 PCMT1 link to infopage 0.781647 7.636907e-23 1.323247e-18 6.616235e-19
3 7912928 8073192 NM_006003 UQCRFS1 link to infopage 0.771184 6.362778e-22 1.102478e-17 3.674928e-18
4 7912928 8140828 NM_003130 SRI link to infopage 0.766504 1.584451e-21 2.745378e-17 6.863444e-18
5 7912928 8007537 NM_145273 CD300LG link to infopage -0.763320 2.912033e-21 5.045679e-17 1.009136e-17
6 7912928 8017210 NM_003916 AP1S2 link to infopage 0.760026 5.412105e-21 9.377555e-17 1.562926e-17
7 7912928 7964466 NM_006400 DCTN2 link to infopage 0.759327 6.164122e-21 1.068057e-16 1.525796e-17
8 7912928 7920492 NM_001098616 C1orf43 link to infopage 0.757489 8.664066e-21 1.501223e-16 1.876528e-17
9 7912928 8132580 NM_006555 YKT6 link to infopage 0.749644 3.581510e-20 6.205682e-16 6.895202e-17
10 7912928 7933164 NM_004966 HNRNPF link to infopage 0.747236 5.479104e-20 9.493644e-16 9.493644e-17
11 7912928 8130952 NM_002793 PSMB1 link to infopage 0.745253 7.748268e-20 1.342542e-15 1.220493e-16
12 7912928 8110821 NM_001044 SLC6A3 link to infopage -0.740500 1.755370e-19 3.041529e-15 2.534607e-16
13 7912928 7990928 ENST00000342039 link to infopage -0.737052 3.142310e-19 5.444681e-15 4.188216e-16
14 7912928 7985459 ENST00000342039 link to infopage -0.737052 3.142310e-19 5.444681e-15 3.889058e-16
15 7912928 7985418 ENST00000342039 link to infopage -0.737052 3.142310e-19 5.444681e-15 3.629787e-16
16 7912928 8067270 NM_153360 APCDD1L link to infopage -0.730662 9.026072e-19 1.563947e-14 9.774672e-16
17 7912928 7997801 NM_013278 IL17C link to infopage -0.730455 9.335112e-19 1.617495e-14 9.514676e-16
18 7912928 8038670 NM_012427 KLK5 link to infopage -0.729264 1.132293e-18 1.961925e-14 1.089958e-15
19 7912928 8015189 NM_030966 KRTAP1-3 link to infopage -0.728466 1.288071e-18 2.231840e-14 1.174653e-15
20 7912928 8019585 NM_030966 KRTAP1-3 link to infopage -0.728466 1.288071e-18 2.231840e-14 1.115920e-15
21 7912928 7994647 NM_145239 PRRT2 link to infopage -0.727484 1.508419e-18 2.613638e-14 1.244589e-15
22 7912928 8168416 NM_032747 USMG5 link to infopage 0.727268 1.561672e-18 2.705910e-14 1.229959e-15
23 7912928 7934367 NM_004034 ANXA7 link to infopage 0.727042 1.619239e-18 2.805656e-14 1.219850e-15
24 7912928 8006562 NM_033315 RASL10B link to infopage -0.726902 1.656065e-18 2.869465e-14 1.195610e-15
25 7912928 7944216 NM_006476 ATP5L link to infopage 0.726872 1.663958e-18 2.883139e-14 1.153256e-15
26 7912928 8095048 NM_030917 FIP1L1 link to infopage 0.724816 2.308868e-18 4.000575e-14 1.538683e-15
27 7912928 7923659 NM_032833 PPP1R15B link to infopage 0.724514 2.422074e-18 4.196728e-14 1.554344e-15
28 7912928 7953021 NM_024551 ADIPOR2 link to infopage 0.720206 4.762147e-18 8.251373e-14 2.946919e-15
29 7912928 8070655 NM_001025204 U2AF1 link to infopage 0.719438 5.365533e-18 9.296860e-14 3.205814e-15
30 7912928 8041236 NM_014946 SPAST link to infopage 0.716972 7.846668e-18 1.359592e-13 4.531974e-15
31 7912928 7922095 NR_026550 BRP44 link to infopage 0.716765 8.098977e-18 1.403310e-13 4.526805e-15
32 7912928 8153346 NM_023946 LYNX1 link to infopage -0.716366 8.608522e-18 1.491599e-13 4.661245e-15
33 7912928 7970546 NM_152726 EFHA1 link to infopage 0.715785 9.407605e-18 1.630056e-13 4.939563e-15
34 7912928 7990566 NM_000126 ETFA link to infopage 0.715471 9.868322e-18 1.709884e-13 5.029071e-15
35 7912928 7913450 NM_005529 HSPG2 link to infopage -0.715340 1.006802e-17 1.744486e-13 4.984247e-15
36 7912928 8131056 NM_017781 CYP2W1 link to infopage -0.715186 1.030683e-17 1.785865e-13 4.960736e-15
37 7912928 8139706 NM_014302 SEC61G link to infopage 0.715058 1.050857e-17 1.820821e-13 4.921137e-15
38 7912928 7918813 NM_002524 NRAS link to infopage 0.711675 1.751257e-17 3.034402e-13 7.985269e-15
39 7912928 7993872 NM_003366 UQCRC2 link to infopage 0.711423 1.818767e-17 3.151377e-13 8.080454e-15
40 7912928 8075016 NM_207644 C22orf36 link to infopage -0.710449 2.103685e-17 3.645054e-13 9.112636e-15
41 7912928 8074701 NM_004173 SLC7A4 link to infopage -0.709946 2.267350e-17 3.928637e-13 9.582041e-15
42 7912928 7940688 NM_002696 POLR2G link to infopage 0.709075 2.580632e-17 4.471460e-13 1.064633e-14
43 7912928 7916372 NM_004872 TMEM59 link to infopage 0.708920 2.640324e-17 4.574889e-13 1.063928e-14
44 7912928 8077781 NM_000551 VHL link to infopage 0.708458 2.827201e-17 4.898691e-13 1.113339e-14
45 7912928 8172358 NM_153477 UXT link to infopage 0.708226 2.926063e-17 5.069989e-13 1.126664e-14
46 7912928 8010583 NR_027255 LOC388428 link to infopage -0.706790 3.615228e-17 6.264106e-13 1.361762e-14
47 7912928 7967641 NM_133448 TMEM132D link to infopage -0.706691 3.667742e-17 6.355097e-13 1.352148e-14
48 7912928 8081945 NM_004547 NDUFB4 link to infopage 0.706334 3.865218e-17 6.697264e-13 1.395263e-14
49 7912928 8093314 NM_004547 NDUFB4 link to infopage 0.706334 3.865218e-17 6.697264e-13 1.366788e-14
50 7912928 8000323 NM_005003 NDUFAB1 link to infopage 0.703935 5.483472e-17 9.501212e-13 1.900242e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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