[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
8967	8015189	NM_030966	KRTAP1-3		keratin associated protein 1-3
8968	8019585	NM_030966	KRTAP1-3		keratin associated protein 1-3

Fetching correlation data, please wait...
Getting list of correlations for id 8967.
Getting list of p-values for id 8967.
1 of 2 done.
Getting list of correlations for id 8968.
Getting list of p-values for id 8968.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.229 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8019585	8015189	NM_030966	KRTAP1-3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8015189	8019585	NM_030966	KRTAP1-3	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8015189	7913450	NM_005529	HSPG2	0.835095	1.725458e-28	5.979402e-24	1.993134e-24
4	8019585	7913450	NM_005529	HSPG2	0.835095	1.725458e-28	5.979402e-24	1.494851e-24
5	8019585	8046922	NM_000090	COL3A1	0.826922	1.671794e-27	5.793436e-23	1.158687e-23
6	8015189	8046922	NM_000090	COL3A1	0.826922	1.671794e-27	5.793436e-23	9.655727e-24
7	8019585	7973510	NM_006032	CPNE6	0.825534	2.429372e-27	8.418745e-23	1.202678e-23
8	8015189	7973510	NM_006032	CPNE6	0.825534	2.429372e-27	8.418745e-23	1.052343e-23
9	8019585	7914667	NM_052896	CSMD2	0.820480	9.221008e-27	3.195448e-22	3.550498e-23
10	8015189	7914667	NM_052896	CSMD2	0.820480	9.221008e-27	3.195448e-22	3.195448e-23
11	8019585	7987701	NM_016642	SPTBN5	0.819149	1.301101e-26	4.508834e-22	4.098940e-23
12	8015189	7987701	NM_016642	SPTBN5	0.819149	1.301101e-26	4.508834e-22	3.757362e-23
13	8015189	8019578	NM_030967	KRTAP1-1	0.816152	2.796826e-26	9.692120e-22	7.455477e-23
14	8019585	8019578	NM_030967	KRTAP1-1	0.816152	2.796826e-26	9.692120e-22	6.922943e-23
15	8019585	8015196	NM_030967	KRTAP1-1	0.816152	2.796826e-26	9.692120e-22	6.461413e-23
16	8015189	8015196	NM_030967	KRTAP1-1	0.816152	2.796826e-26	9.692120e-22	6.057575e-23
17	8015189	7955896	NM_016057	COPZ1	-0.815097	3.648805e-26	1.264457e-21	7.437981e-23
18	8019585	7955896	NM_016057	COPZ1	-0.815097	3.648805e-26	1.264457e-21	7.024760e-23
19	8015189	8001014	NM_173502	PRSS36	0.814165	4.608567e-26	1.597053e-21	8.405542e-23
20	8019585	8001014	NM_173502	PRSS36	0.814165	4.608567e-26	1.597053e-21	7.985265e-23
21	8015189	8013042	NM_000422	KRT17	0.811801	8.285988e-26	2.871426e-21	1.367346e-22
22	8019585	8013042	NM_000422	KRT17	0.811801	8.285988e-26	2.871426e-21	1.305194e-22
23	8015189	8019588	NM_031957	KRTAP1-5	0.810203	1.226193e-25	4.249247e-21	1.847499e-22
24	8015189	8015179	NM_031957	KRTAP1-5	0.810203	1.226193e-25	4.249247e-21	1.770520e-22
25	8019585	8015179	NM_031957	KRTAP1-5	0.810203	1.226193e-25	4.249247e-21	1.699699e-22
26	8019585	8019588	NM_031957	KRTAP1-5	0.810203	1.226193e-25	4.249247e-21	1.634326e-22
27	8015189	8061529	NM_014012	REM1	0.806197	3.223467e-25	1.117060e-20	4.137261e-22
28	8019585	8061529	NM_014012	REM1	0.806197	3.223467e-25	1.117060e-20	3.989501e-22
29	8019585	7997880	NM_004933	CDH15	0.802061	8.540255e-25	2.959540e-20	1.020531e-21
30	8015189	7997880	NM_004933	CDH15	0.802061	8.540255e-25	2.959540e-20	9.865134e-22
31	8015189	8033674	NM_024690	MUC16	0.798352	2.007121e-24	6.955476e-20	2.243702e-21
32	8019585	8033674	NM_024690	MUC16	0.798352	2.007121e-24	6.955476e-20	2.173586e-21
33	8015189	8010768			0.797428	2.476479e-24	8.581990e-20	2.600603e-21
34	8019585	8010768			0.797428	2.476479e-24	8.581990e-20	2.524115e-21
35	8015189	8125805	NM_000841	GRM4	0.794759	4.515935e-24	1.564952e-19	4.471292e-21
36	8019585	8125805	NM_000841	GRM4	0.794759	4.515935e-24	1.564952e-19	4.347089e-21
37	8019585	8165416	NM_203468	ENTPD2	0.793480	6.004435e-24	2.080777e-19	5.623722e-21
38	8015189	8165416	NM_203468	ENTPD2	0.793480	6.004435e-24	2.080777e-19	5.475729e-21
39	8015189	8131056	NM_017781	CYP2W1	0.792474	7.500429e-24	2.599199e-19	6.664612e-21
40	8019585	8131056	NM_017781	CYP2W1	0.792474	7.500429e-24	2.599199e-19	6.497997e-21
41	8015189	7937560	NM_002457	MUC2	0.791626	9.041316e-24	3.133177e-19	7.641896e-21
42	8019585	7937560	NM_002457	MUC2	0.791626	9.041316e-24	3.133177e-19	7.459946e-21
43	8015189	8114550	NM_004883	NRG2	0.790904	1.059170e-23	3.670448e-19	8.535925e-21
44	8019585	8114550	NM_004883	NRG2	0.790904	1.059170e-23	3.670448e-19	8.341927e-21
45	8019585	7959234	NM_000545	HNF1A	0.788561	1.762568e-23	6.108004e-19	1.357334e-20
46	8015189	7959234	NM_000545	HNF1A	0.788561	1.762568e-23	6.108004e-19	1.327827e-20
47	8019585	8026900	NM_002248	KCNN1	0.788406	1.822565e-23	6.315918e-19	1.343812e-20
48	8015189	8026900	NM_002248	KCNN1	0.788406	1.822565e-23	6.315918e-19	1.315816e-20
49	8015189	8007537	NM_145273	CD300LG	0.788101	1.946187e-23	6.744317e-19	1.376391e-20
50	8019585	8007537	NM_145273	CD300LG	0.788101	1.946187e-23	6.744317e-19	1.348863e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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