[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7532	8015179	NM_031957	KRTAP1-5		keratin associated protein 1-5
7533	8019588	NM_031957	KRTAP1-5		keratin associated protein 1-5

Fetching correlation data, please wait...
Getting list of correlations for id 7532.
Getting list of p-values for id 7532.
1 of 2 done.
Getting list of correlations for id 7533.
Getting list of p-values for id 7533.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.198 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8015179	8019588	NM_031957	KRTAP1-5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8019588	8015179	NM_031957	KRTAP1-5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8015179	8019585	NM_030966	KRTAP1-3	0.810203	1.226193e-25	4.249247e-21	1.416416e-21
4	8015179	8015189	NM_030966	KRTAP1-3	0.810203	1.226193e-25	4.249247e-21	1.062312e-21
5	8019588	8015189	NM_030966	KRTAP1-3	0.810203	1.226193e-25	4.249247e-21	8.498495e-22
6	8019588	8019585	NM_030966	KRTAP1-3	0.810203	1.226193e-25	4.249247e-21	7.082079e-22
7	8015179	7970262	NM_001008895	CUL4A	-0.759519	5.948520e-21	2.061400e-16	2.944857e-17
8	8019588	7970262	NM_001008895	CUL4A	-0.759519	5.948520e-21	2.061400e-16	2.576750e-17
9	8015179	8015196	NM_030967	KRTAP1-1	0.751700	2.481685e-20	8.600030e-16	9.555588e-17
10	8015179	8019578	NM_030967	KRTAP1-1	0.751700	2.481685e-20	8.600030e-16	8.600030e-17
11	8019588	8019578	NM_030967	KRTAP1-1	0.751700	2.481685e-20	8.600030e-16	7.818209e-17
12	8019588	8015196	NM_030967	KRTAP1-1	0.751700	2.481685e-20	8.600030e-16	7.166691e-17
13	8015179	7973510	NM_006032	CPNE6	0.748030	4.765634e-20	1.651483e-15	1.270371e-16
14	8019588	7973510	NM_006032	CPNE6	0.748030	4.765634e-20	1.651483e-15	1.179631e-16
15	8015179	7955896	NM_016057	COPZ1	-0.746505	6.228430e-20	2.158400e-15	1.438933e-16
16	8019588	7955896	NM_016057	COPZ1	-0.746505	6.228430e-20	2.158400e-15	1.349000e-16
17	8019588	8046922	NM_000090	COL3A1	0.742654	1.214465e-19	4.208608e-15	2.475652e-16
18	8015179	8046922	NM_000090	COL3A1	0.742654	1.214465e-19	4.208608e-15	2.338116e-16
19	8015179	7950701	NM_001098816	ODZ4	0.742418	1.264778e-19	4.382962e-15	2.306822e-16
20	8019588	7950701	NM_001098816	ODZ4	0.742418	1.264778e-19	4.382962e-15	2.191481e-16
21	8019588	7938669	NM_014267	C11orf58	-0.736835	3.258569e-19	1.129224e-14	5.377259e-16
22	8015179	7938669	NM_014267	C11orf58	-0.736835	3.258569e-19	1.129224e-14	5.132838e-16
23	8019588	8030582	NM_001145809	MYH14	0.727918	1.406842e-18	4.875272e-14	2.119683e-15
24	8015179	8030582	NM_001145809	MYH14	0.727918	1.406842e-18	4.875272e-14	2.031363e-15
25	8015179	8098414	NM_021928	SPCS3	-0.723823	2.702146e-18	9.364018e-14	3.745607e-15
26	8019588	8098414	NM_021928	SPCS3	-0.723823	2.702146e-18	9.364018e-14	3.601545e-15
27	8019588	7914667	NM_052896	CSMD2	0.722666	3.242193e-18	1.123550e-13	4.161295e-15
28	8015179	7914667	NM_052896	CSMD2	0.722666	3.242193e-18	1.123550e-13	4.012677e-15
29	8015179	7959921	AK098523	LOC338797	0.720049	4.879809e-18	1.691049e-13	5.831204e-15
30	8019588	7959921	AK098523	LOC338797	0.720049	4.879809e-18	1.691049e-13	5.636830e-15
31	8015179	7933498	ENST00000311787		0.719032	5.713396e-18	1.979920e-13	6.386840e-15
32	8019588	7933498	ENST00000311787		0.719032	5.713396e-18	1.979920e-13	6.187251e-15
33	8015179	7973056	NM_001641	APEX1	-0.716988	7.826904e-18	2.712335e-13	8.219198e-15
34	8019588	7973056	NM_001641	APEX1	-0.716988	7.826904e-18	2.712335e-13	7.977457e-15
35	8019588	8067820	BC024764	IQSEC3	0.716585	8.325934e-18	2.885269e-13	8.243626e-15
36	8015179	8067820	BC024764	IQSEC3	0.716585	8.325934e-18	2.885269e-13	8.014637e-15
37	8015179	7912863	NR_002729	MST1P9	0.715792	9.397252e-18	3.256524e-13	8.801415e-15
38	8019588	7912863	NR_002729	MST1P9	0.715792	9.397252e-18	3.256524e-13	8.569799e-15
39	8019588	7952227	NM_015645	C1QTNF5	0.714995	1.061002e-17	3.676796e-13	9.427683e-15
40	8015179	7952227	NM_015645	C1QTNF5	0.714995	1.061002e-17	3.676796e-13	9.191991e-15
41	8019588	8001014	NM_173502	PRSS36	0.711551	1.784319e-17	6.183380e-13	1.508142e-14
42	8015179	8001014	NM_173502	PRSS36	0.711551	1.784319e-17	6.183380e-13	1.472233e-14
43	8019588	8001496	NM_007006	NUDT21	-0.710922	1.960168e-17	6.792765e-13	1.579713e-14
44	8015179	8001496	NM_007006	NUDT21	-0.710922	1.960168e-17	6.792765e-13	1.543810e-14
45	8019588	7963359	NM_002282	KRT83	0.709377	2.467572e-17	8.551123e-13	1.900250e-14
46	8015179	7963359	NM_002282	KRT83	0.709377	2.467572e-17	8.551123e-13	1.858940e-14
47	8019588	7992954	AK098732	TRAP1	0.706627	3.702389e-17	1.283026e-12	2.729842e-14
48	8015179	7992954	AK098732	TRAP1	0.706627	3.702389e-17	1.283026e-12	2.672971e-14
49	8019588	8010768			0.706233	3.922832e-17	1.359418e-12	2.774323e-14
50	8015179	8010768			0.706233	3.922832e-17	1.359418e-12	2.718836e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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