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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13537 8003939 NM_003963 TM4SF5 link to infopage transmembrane 4 L six family member 5

Fetching correlation data, please wait...
Getting list of correlations for id 13537.
Getting list of p-values for id 13537.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8003939 8159036 NM_139025 ADAMTS13 link to infopage 0.860155 6.935332e-32 1.201685e-27 1.201685e-27
2 8003939 8137330 ENST00000356058 link to infopage 0.851269 1.306602e-30 2.263949e-26 1.131974e-26
3 8003939 8119435 NM_004828 NCR2 link to infopage 0.847560 4.208172e-30 7.291500e-26 2.430500e-26
4 8003939 8048628 NM_001005209 TMEM198 link to infopage 0.840773 3.307645e-29 5.731156e-25 1.432789e-25
5 8003939 8038299 NM_033142 CGB7 link to infopage 0.840152 3.974344e-29 6.886345e-25 1.377269e-25
6 8003939 8053728 NM_000798 DRD5 link to infopage 0.836446 1.171371e-28 2.029635e-24 3.382725e-25
7 8003939 8132070 NM_002047 GARS link to infopage -0.834815 1.869064e-28 3.238527e-24 4.626467e-25
8 8003939 8125805 NM_000841 GRM4 link to infopage 0.833407 2.786081e-28 4.827443e-24 6.034304e-25
9 8003939 8151625 AF495523 REXO1L1 link to infopage 0.832814 3.292617e-28 5.705118e-24 6.339020e-25
10 8003939 8151621 AF495523 REXO1L1 link to infopage 0.832814 3.292617e-28 5.705118e-24 5.705118e-25
11 8003939 8151617 AF495523 REXO1L1 link to infopage 0.832814 3.292617e-28 5.705118e-24 5.186471e-25
12 8003939 8151613 AF495523 REXO1L1 link to infopage 0.832814 3.292617e-28 5.705118e-24 4.754265e-25
13 8003939 8151605 AF495523 REXO1L1 link to infopage 0.832814 3.292617e-28 5.705118e-24 4.388552e-25
14 8003939 8015210 NM_033184 KRTAP2-4 link to infopage 0.830992 5.478130e-28 9.491955e-24 6.779968e-25
15 8003939 8019576 NM_033184 KRTAP2-4 link to infopage 0.830992 5.478130e-28 9.491955e-24 6.327970e-25
16 8003939 8037732 NM_001029861 NANOS2 link to infopage 0.829352 8.618788e-28 1.493377e-23 9.333609e-25
17 8003939 8060325 NM_207469 DEFB132 link to infopage 0.829065 9.324027e-28 1.615574e-23 9.503378e-25
18 8003939 8028600 NM_001001414 NCCRP1 link to infopage 0.826793 1.731216e-27 2.999678e-23 1.666488e-24
19 8003939 7992758 NM_172229 KREMEN2 link to infopage 0.826460 1.893924e-27 3.281603e-23 1.727159e-24
20 8003939 8013259 ENST00000300983 link to infopage 0.823807 3.850471e-27 6.671711e-23 3.335856e-24
21 8003939 8004842 NM_173728 ARHGEF15 link to infopage 0.822818 5.001119e-27 8.665440e-23 4.126400e-24
22 8003939 8013112 NM_016084 RASD1 link to infopage 0.822381 5.610799e-27 9.721831e-23 4.419014e-24
23 8003939 7991939 NM_145294 WDR90 link to infopage 0.820823 8.435001e-27 1.461533e-22 6.354490e-24
24 8003939 8153346 NM_023946 LYNX1 link to infopage 0.820734 8.633167e-27 1.495869e-22 6.232787e-24
25 8003939 8048551 NM_005876 SPEG link to infopage 0.818610 1.494671e-26 2.589816e-22 1.035926e-23
26 8003939 7927099 NR_026827 LOC84856 link to infopage 0.817493 1.989422e-26 3.447071e-22 1.325796e-23
27 8003939 7937560 NM_002457 MUC2 link to infopage 0.815771 3.078845e-26 5.334715e-22 1.975820e-23
28 8003939 8110169 NM_014613 FAF2 link to infopage -0.815713 3.124899e-26 5.414512e-22 1.933754e-23
29 8003939 8110821 NM_001044 SLC6A3 link to infopage 0.815616 3.201514e-26 5.547264e-22 1.912850e-23
30 8003939 8073941 ENST00000411210 link to infopage 0.815278 3.486056e-26 6.040289e-22 2.013430e-23
31 8003939 8038292 NM_033043 CGB5 link to infopage 0.815091 3.654033e-26 6.331343e-22 2.042369e-23
32 8003939 8131056 NM_017781 CYP2W1 link to infopage 0.815051 3.690759e-26 6.394978e-22 1.998431e-23
33 8003939 8034469 NM_032301 FBXW9 link to infopage 0.814462 4.278940e-26 7.414119e-22 2.246703e-23
34 8003939 8164562 NM_199350 C9orf50 link to infopage 0.813982 4.824997e-26 8.360272e-22 2.458904e-23
35 8003939 8067521 NM_080473 GATA5 link to infopage 0.813919 4.900345e-26 8.490828e-22 2.425951e-23
36 8003939 8067409 NM_005560 LAMA5 link to infopage 0.813853 4.982260e-26 8.632762e-22 2.397989e-23
37 8003939 8107530 ENST00000365222 link to infopage 0.813664 5.222338e-26 9.048745e-22 2.445607e-23
38 8003939 7998015 NM_032451 SPIRE2 link to infopage 0.813316 5.695878e-26 9.869248e-22 2.597171e-23
39 8003939 8153838 NM_004260 RECQL4 link to infopage 0.812481 7.006589e-26 1.214032e-21 3.112902e-23
40 8003939 8016646 NM_000088 COL1A1 link to infopage 0.811554 8.805818e-26 1.525784e-21 3.814460e-23
41 8003939 8008201 NM_002507 NGFR link to infopage 0.811127 9.780205e-26 1.694616e-21 4.133210e-23
42 8003939 8000772 NM_031478 FAM57B link to infopage 0.811109 9.823413e-26 1.702103e-21 4.052626e-23
43 8003939 8030181 NM_033378 CGB2 link to infopage 0.810769 1.067889e-25 1.850331e-21 4.303094e-23
44 8003939 8038109 NM_017708 FAM83E link to infopage 0.809797 1.353741e-25 2.345627e-21 5.330971e-23
45 8003939 8131087 NM_001080461 UNCX link to infopage 0.809442 1.475870e-25 2.557240e-21 5.682755e-23
46 8003939 8074131 NM_001080420 SHANK3 link to infopage 0.808828 1.712861e-25 2.967874e-21 6.451900e-23
47 8003939 7971820 NM_016075 VPS36 link to infopage -0.808407 1.896639e-25 3.286306e-21 6.992141e-23
48 8003939 8066668 NM_020967 NCOA5 link to infopage -0.808036 2.073989e-25 3.593601e-21 7.486668e-23
49 8003939 8087145 NM_001407 CELSR3 link to infopage 0.807292 2.480704e-25 4.298316e-21 8.772074e-23
50 8003939 8017499 NM_022579 CSHL1 link to infopage 0.806960 2.685824e-25 4.653727e-21 9.307454e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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