[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13250	7905355	NM_024041	SCNM1		sodium channel modifier 1

Fetching correlation data, please wait...
Getting list of correlations for id 13250.
Getting list of p-values for id 13250.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.171 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7905355	7964466	NM_006400	DCTN2	0.770237	7.665830e-22	1.328258e-17	1.328258e-17
2	7905355	7975976	NM_012111	AHSA1	0.765735	1.836876e-21	3.182756e-17	1.591378e-17
3	7905355	8132580	NM_006555	YKT6	0.762729	3.257194e-21	5.643741e-17	1.881247e-17
4	7905355	8070655	NM_001025204	U2AF1	0.760793	4.688542e-21	8.123837e-17	2.030959e-17
5	7905355	8116020	NM_006816	LMAN2	0.757052	9.390575e-21	1.627105e-16	3.254210e-17
6	7905355	8081135	NM_001134422	CDV3	0.753939	1.657770e-20	2.872419e-16	4.787365e-17
7	7905355	7976189	NM_002802	PSMC1	0.752463	2.163870e-20	3.749337e-16	5.356196e-17
8	7905355	8080923	NM_002802	PSMC1	0.751172	2.727897e-20	4.726628e-16	5.908285e-17
9	7905355	8039796	NM_014453	CHMP2A	0.751060	2.782960e-20	4.822035e-16	5.357817e-17
10	7905355	8134699	NM_006833	COPS6	0.750627	3.006635e-20	5.209596e-16	5.209596e-17
11	7905355	7977657	NM_031314	HNRNPC	0.744287	9.163509e-20	1.587761e-15	1.443419e-16
12	7905355	8009932	NM_013260	SAP30BP	0.742212	1.310250e-19	2.270270e-15	1.891891e-16
13	7905355	8104449	NM_012073	CCT5	0.739953	1.926457e-19	3.337972e-15	2.567671e-16
14	7905355	8049180	NM_004846	EIF4E2	0.738297	2.549060e-19	4.416757e-15	3.154827e-16
15	7905355	7911619	NM_002074	GNB1	0.731173	8.303782e-19	1.438796e-14	9.591975e-16
16	7905355	7934367	NM_004034	ANXA7	0.729336	1.119253e-18	1.939330e-14	1.212081e-15
17	7905355	8134552	NM_005720	ARPC1B	0.727056	1.615660e-18	2.799454e-14	1.646738e-15
18	7905355	8168500	NM_000291	PGK1	0.725510	2.068064e-18	3.583335e-14	1.990742e-15
19	7905355	8028514	NM_013234	EIF3K	0.725495	2.073063e-18	3.591996e-14	1.890524e-15
20	7905355	8138773	NM_022170	EIF4H	0.725227	2.163208e-18	3.748191e-14	1.874096e-15
21	7905355	8090490	NM_002950	RPN1	0.724374	2.476697e-18	4.291373e-14	2.043511e-15
22	7905355	7967976	NM_005870	SAP18	0.722341	3.411729e-18	5.911502e-14	2.687046e-15
23	7905355	8099340	NM_017491	WDR1	0.722312	3.427693e-18	5.939164e-14	2.582245e-15
24	7905355	7955810	NM_018457	PRR13	0.721551	3.861513e-18	6.690844e-14	2.787852e-15
25	7905355	7974587	NM_018477	ACTR10	0.720727	4.391567e-18	7.609268e-14	3.043707e-15
26	7905355	7928752	NM_014394	GHITM	0.719623	5.213294e-18	9.033075e-14	3.474260e-15
27	7905355	7915758	NM_021639	GPBP1L1	0.718696	6.018209e-18	1.042775e-13	3.862130e-15
28	7905355	8139421	NM_012412	H2AFV	0.718353	6.344955e-18	1.099390e-13	3.926394e-15
29	7905355	8089911	NM_005335	HCLS1	0.718239	6.457604e-18	1.118909e-13	3.858307e-15
30	7905355	7978208	NM_012461	TINF2	0.716544	8.377271e-18	1.451530e-13	4.838432e-15
31	7905355	7956593	NM_006812	OS9	0.713755	1.280594e-17	2.218886e-13	7.157696e-15
32	7905355	8139706	NM_014302	SEC61G	0.713164	1.400023e-17	2.425819e-13	7.580685e-15
33	7905355	8115168	NM_018047	RBM22	0.711837	1.709457e-17	2.961976e-13	8.975686e-15
34	7905355	7947015	NM_006292	TSG101	0.711789	1.721706e-17	2.983200e-13	8.774117e-15
35	7905355	8133434	NM_022170	EIF4H	0.710342	2.137626e-17	3.703865e-13	1.058247e-14
36	7905355	8072206	NM_005243	EWSR1	0.710309	2.148151e-17	3.722101e-13	1.033917e-14
37	7905355	8036808	NM_018457	PRR13	0.709939	2.269642e-17	3.932608e-13	1.062867e-14
38	7905355	8137252	NM_130759	GIMAP1	0.709383	2.465070e-17	4.271227e-13	1.124007e-14
39	7905355	8048234	NM_152862	ARPC2	0.708019	3.016517e-17	5.226719e-13	1.340184e-14
40	7905355	8122705	NM_005389	PCMT1	0.707937	3.053346e-17	5.290533e-13	1.322633e-14
41	7905355	8090533	NM_020701	ISY1	0.707466	3.273019e-17	5.671160e-13	1.383210e-14
42	7905355	8006392	NM_002815	PSMD11	0.707412	3.299147e-17	5.716433e-13	1.361055e-14
43	7905355	8110894	NM_017755	NSUN2	0.707212	3.397575e-17	5.886978e-13	1.369065e-14
44	7905355	8015715	NM_003766	BECN1	0.705996	4.060915e-17	7.036348e-13	1.599170e-14
45	7905355	8119609	NM_006586	CNPY3	0.705438	4.406460e-17	7.635074e-13	1.696683e-14
46	7905355	7932069	NM_014142	NUDT5	0.705047	4.664826e-17	8.082745e-13	1.757118e-14
47	7905355	7983512	NM_021199	SQRDL	0.704851	4.799987e-17	8.316937e-13	1.769561e-14
48	7905355	7990020	NM_006305	ANP32A	0.703295	6.016941e-17	1.042555e-12	2.171990e-14
49	7905355	7970287	NM_005561	LAMP1	0.702749	6.511005e-17	1.128162e-12	2.302371e-14
50	7905355	7912670	NM_006004	UQCRH	0.702292	6.954139e-17	1.204944e-12	2.409887e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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