[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14617	7978208	NM_012461	TINF2		TERF1 (TRF1)-interacting nuclear factor 2

Fetching correlation data, please wait...
Getting list of correlations for id 14617.
Getting list of p-values for id 14617.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.152 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7978208	8133434	NM_022170	EIF4H	0.869127	2.891698e-33	5.010446e-29	5.010446e-29
2	7978208	8116020	NM_006816	LMAN2	0.860787	5.585209e-32	9.677492e-28	4.838746e-28
3	7978208	8077550	NM_001077525	MTMR14	0.859633	8.287083e-32	1.435903e-27	4.786343e-28
4	7978208	8134552	NM_005720	ARPC1B	0.857160	1.907642e-31	3.305372e-27	8.263430e-28
5	7978208	8138773	NM_022170	EIF4H	0.856411	2.447902e-31	4.241479e-27	8.482958e-28
6	7978208	7963935	NM_032364	DNAJC14	0.841957	2.324752e-29	4.028097e-25	6.713495e-26
7	7978208	7987172	NM_020154	C15orf24	0.841881	2.377962e-29	4.120296e-25	5.886136e-26
8	7978208	7921752	NM_001025598	ARHGAP30	0.837312	9.120872e-29	1.580374e-24	1.975467e-25
9	7978208	8119648	NM_057161	KLHDC3	0.832951	3.167880e-28	5.488986e-24	6.098874e-25
10	7978208	8006392	NM_002815	PSMD11	0.832721	3.379292e-28	5.855299e-24	5.855299e-25
11	7978208	7990211	NM_000520	HEXA	0.830742	5.871373e-28	1.017333e-23	9.248480e-25
12	7978208	8110803	NM_030782	CLPTM1L	0.828186	1.185938e-27	2.054875e-23	1.712396e-24
13	7978208	7999233	NM_032569	GLYR1	0.825155	2.689186e-27	4.659552e-23	3.584271e-24
14	7978208	8132580	NM_006555	YKT6	0.822242	5.819711e-27	1.008381e-22	7.202724e-24
15	7978208	7915758	NM_021639	GPBP1L1	0.822065	6.097380e-27	1.056493e-22	7.043287e-24
16	7978208	7958152	NM_002629	PGAM1	0.821689	6.727341e-27	1.165646e-22	7.285289e-24
17	7978208	7906703	NM_004550	NDUFS2	0.821028	7.995321e-27	1.385349e-22	8.149114e-24
18	7978208	8030007	NM_001425	EMP3	0.820853	8.368544e-27	1.450018e-22	8.055653e-24
19	7978208	7913256	NM_005216	DDOST	0.818877	1.395535e-26	2.418043e-22	1.272654e-23
20	7978208	8028514	NM_013234	EIF3K	0.817812	1.833682e-26	3.177221e-22	1.588610e-23
21	7978208	7929624	NM_002629	PGAM1	0.816733	2.413630e-26	4.182097e-22	1.991475e-23
22	7978208	7978201	NM_006156	NEDD8	0.814829	3.902979e-26	6.762692e-22	3.073951e-23
23	7978208	8132539	NM_014063	DBNL	0.813593	5.316021e-26	9.211069e-22	4.004813e-23
24	7978208	8099340	NM_017491	WDR1	0.812198	7.513238e-26	1.301819e-21	5.424245e-23
25	7978208	7920515	NM_017582	UBE2Q1	0.811940	8.007985e-26	1.387544e-21	5.550174e-23
26	7978208	7940051	NM_015457	ZDHHC5	0.807652	2.274852e-25	3.941636e-21	1.516014e-22
27	7978208	8176282	NM_001029891	PGAM4	0.806826	2.773801e-25	4.806164e-21	1.780061e-22
28	7978208	8173729	NM_001029891	PGAM4	0.806826	2.773801e-25	4.806164e-21	1.716487e-22
29	7978208	8117760	NM_001098479	HLA-F	0.805711	3.618476e-25	6.269733e-21	2.161977e-22
30	7978208	7940688	NM_002696	POLR2G	0.803543	6.040148e-25	1.046576e-20	3.488588e-22
31	7978208	7965480	NM_002629	PGAM1	0.801440	9.867376e-25	1.709720e-20	5.515227e-22
32	7978208	8019046	NM_014740	EIF4A3	0.801375	1.001691e-24	1.735630e-20	5.423843e-22
33	7978208	8179019	NM_018950	HLA-F	0.800898	1.118590e-24	1.938182e-20	5.873278e-22
34	7978208	7919856	NM_181746	LASS2	0.800757	1.155635e-24	2.002368e-20	5.889319e-22
35	7978208	8004030	NM_015528	RNF167	0.799761	1.453891e-24	2.519158e-20	7.197594e-22
36	7978208	8073192	NM_006003	UQCRFS1	0.799354	1.596380e-24	2.766047e-20	7.683465e-22
37	7978208	8163784	NM_012164	FBXW2	0.798924	1.761220e-24	3.051666e-20	8.247747e-22
38	7978208	8164067	NM_002799	PSMB7	0.798801	1.811693e-24	3.139120e-20	8.260842e-22
39	7978208	7959282	NM_194271	RNF34	0.798148	2.102660e-24	3.643279e-20	9.341741e-22
40	7978208	7941709	NM_002896	RBM4	0.798022	2.163976e-24	3.749521e-20	9.373803e-22
41	7978208	8160914	NM_007126	VCP	0.797406	2.489003e-24	4.312696e-20	1.051877e-21
42	7978208	8146142	NM_178819	AGPAT6	0.797306	2.545939e-24	4.411349e-20	1.050321e-21
43	7978208	7911619	NM_002074	GNB1	0.795662	3.689155e-24	6.392200e-20	1.486558e-21
44	7978208	7899737	NM_003757	EIF3I	0.793583	5.868635e-24	1.016858e-19	2.311042e-21
45	7978208	7899504	NM_006582	GMEB1	0.791236	9.848942e-24	1.706526e-19	3.792280e-21
46	7978208	7989619	NM_000942	PPIB	0.789187	1.539136e-23	2.666861e-19	5.797524e-21
47	7978208	8082478	NM_016128	COPG	0.789186	1.539527e-23	2.667538e-19	5.675612e-21
48	7978208	8009932	NM_013260	SAP30BP	0.789040	1.589126e-23	2.753478e-19	5.736412e-21
49	7978208	7915504	NM_022821	ELOVL1	0.788996	1.604408e-23	2.779958e-19	5.673384e-21
50	7978208	7982531	NM_006305	ANP32A	0.788699	1.710832e-23	2.964359e-19	5.928717e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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