[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16413	8030007	NM_001425	EMP3		epithelial membrane protein 3

Fetching correlation data, please wait...
Getting list of correlations for id 16413.
Getting list of p-values for id 16413.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8030007	8134552	NM_005720	ARPC1B	0.852990	7.514220e-31	1.301989e-26	1.301989e-26
2	8030007	7989619	NM_000942	PPIB	0.852541	8.686519e-31	1.505113e-26	7.525566e-27
3	8030007	8116020	NM_006816	LMAN2	0.848558	3.081612e-30	5.339509e-26	1.779836e-26
4	8030007	7913256	NM_005216	DDOST	0.848533	3.106357e-30	5.382385e-26	1.345596e-26
5	8030007	8138773	NM_022170	EIF4H	0.831750	4.435179e-28	7.684835e-24	1.536967e-24
6	8030007	8179019	NM_018950	HLA-F	0.831461	4.807766e-28	8.330416e-24	1.388403e-24
7	8030007	8119648	NM_057161	KLHDC3	0.828340	1.137147e-27	1.970334e-23	2.814763e-24
8	8030007	8177717	NM_018950	HLA-F	0.827882	1.288428e-27	2.232459e-23	2.790574e-24
9	8030007	8019046	NM_014740	EIF4A3	0.827310	1.504926e-27	2.607585e-23	2.897316e-24
10	8030007	8133434	NM_022170	EIF4H	0.822912	4.879518e-27	8.454741e-23	8.454741e-24
11	8030007	7912198	NM_001428	ENO1	0.821696	6.716511e-27	1.163770e-22	1.057973e-23
12	8030007	7978208	NM_012461	TINF2	0.820853	8.368544e-27	1.450018e-22	1.208348e-23
13	8030007	8117760	NM_001098479	HLA-F	0.819857	1.083851e-26	1.877989e-22	1.444607e-23
14	8030007	8028514	NM_013234	EIF3K	0.819165	1.295755e-26	2.245154e-22	1.603682e-23
15	8030007	7940688	NM_002696	POLR2G	0.808530	1.841275e-25	3.190378e-21	2.126918e-22
16	8030007	8040908	NM_014748	SNX17	0.803368	6.292662e-25	1.090329e-20	6.814559e-22
17	8030007	7973564	NM_176783	PSME1	0.803174	6.585266e-25	1.141029e-20	6.711935e-22
18	8030007	7963911	NM_001780	CD63	0.802470	7.764381e-25	1.345334e-20	7.474079e-22
19	8030007	8134699	NM_006833	COPS6	0.802123	8.417713e-25	1.458537e-20	7.676511e-22
20	8030007	8006812	NM_002795	PSMB3	0.800038	1.364289e-24	2.363903e-20	1.181951e-21
21	8030007	8049180	NM_004846	EIF4E2	0.798440	1.967211e-24	3.408586e-20	1.623136e-21
22	8030007	7958152	NM_002629	PGAM1	0.798122	2.115112e-24	3.664854e-20	1.665843e-21
23	8030007	8064522	NM_174856	IDH3B	0.797675	2.341312e-24	4.056792e-20	1.763822e-21
24	8030007	8035304	NM_004335	BST2	0.795154	4.134649e-24	7.164106e-20	2.985044e-21
25	8030007	7929624	NM_002629	PGAM1	0.793017	6.653497e-24	1.152851e-19	4.611406e-21
26	8030007	8165309	NM_003792	EDF1	0.791704	8.887952e-24	1.540015e-19	5.923136e-21
27	8030007	7978201	NM_006156	NEDD8	0.788339	1.849068e-23	3.203881e-19	1.186623e-20
28	8030007	8104166	NM_004168	SDHA	0.787951	2.010386e-23	3.483396e-19	1.244070e-20
29	8030007	7965480	NM_002629	PGAM1	0.787917	2.025114e-23	3.508914e-19	1.209970e-20
30	8030007	8077550	NM_001077525	MTMR14	0.787272	2.326250e-23	4.030694e-19	1.343565e-20
31	8030007	8009227	NM_002805	PSMC5	0.786752	2.600280e-23	4.505506e-19	1.453389e-20
32	8030007	8084423	NM_002808	PSMD2	0.785911	3.111240e-23	5.390845e-19	1.684639e-20
33	8030007	8006392	NM_002815	PSMD11	0.785089	3.704973e-23	6.419607e-19	1.945335e-20
34	8030007	8073645	NM_015380	SAMM50	0.783996	4.668127e-23	8.088464e-19	2.378960e-20
35	8030007	8064502	NM_003091	SNRPB	0.782376	6.558831e-23	1.136449e-18	3.246996e-20
36	8030007	7990211	NM_000520	HEXA	0.781125	8.511285e-23	1.474750e-18	4.096529e-20
37	8030007	7941382	NM_182710	KAT5	0.780113	1.049526e-22	1.818513e-18	4.914901e-20
38	8030007	8173729	NM_001029891	PGAM4	0.779701	1.142591e-22	1.979768e-18	5.209915e-20
39	8030007	8176282	NM_001029891	PGAM4	0.779701	1.142591e-22	1.979768e-18	5.076328e-20
40	8030007	8074969	NM_001355	DDT	0.779644	1.156095e-22	2.003165e-18	5.007913e-20
41	8030007	7918345	NM_002790	PSMA5	0.778430	1.483542e-22	2.570533e-18	6.269593e-20
42	8030007	7994756	NM_002720	PPP4C	0.778082	1.592970e-22	2.760139e-18	6.571760e-20
43	8030007	7949075	NM_016404	TRMT112	0.773950	3.673109e-22	6.364397e-18	1.480092e-19
44	8030007	8015712	NM_001040431	CCDC56	0.773783	3.798261e-22	6.581246e-18	1.495738e-19
45	8030007	7916590	NM_001625	AK2	0.770615	7.117326e-22	1.233219e-17	2.740487e-19
46	8030007	8004497	NM_001416	EIF4A1	0.769700	8.517001e-22	1.475741e-17	3.208132e-19
47	8030007	7906703	NM_004550	NDUFS2	0.769613	8.663776e-22	1.501173e-17	3.193984e-19
48	8030007	7915504	NM_022821	ELOVL1	0.767766	1.241599e-21	2.151318e-17	4.481913e-19
49	8030007	7899737	NM_003757	EIF3I	0.767485	1.310965e-21	2.271509e-17	4.635733e-19
50	8030007	8073457	NM_001469	XRCC6	0.764487	2.332536e-21	4.041586e-17	8.083171e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation