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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16632.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16632 8006812 NM_002795 PSMB3 link to infopage proteasome (prosome, macropain) subunit, beta type, 3

Fetching correlation data, please wait...
Getting list of correlations for id 16632.
Getting list of p-values for id 16632.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8006812 7983512 NM_021199 SQRDL link to infopage 0.834082 2.301432e-28 3.987690e-24 3.987690e-24
2 8006812 8018305 NM_016185 HN1 link to infopage 0.824619 3.102624e-27 5.375916e-23 2.687958e-23
3 8006812 7900922 NM_004047 ATP6V0B link to infopage 0.816967 2.274321e-26 3.940716e-22 1.313572e-22
4 8006812 8013741 NM_006923 SDF2 link to infopage 0.813279 5.748205e-26 9.959916e-22 2.489979e-22
5 8006812 8063369 NM_018683 RNF114 link to infopage 0.806395 3.074718e-25 5.327564e-21 1.065513e-21
6 8006812 8030007 NM_001425 EMP3 link to infopage 0.800038 1.364289e-24 2.363903e-20 3.939838e-21
7 8006812 8134552 NM_005720 ARPC1B link to infopage 0.799543 1.528568e-24 2.648551e-20 3.783644e-21
8 8006812 7956593 NM_006812 OS9 link to infopage 0.791699 8.897582e-24 1.541684e-19 1.927105e-20
9 8006812 7994756 NM_002720 PPP4C link to infopage 0.791307 9.695161e-24 1.679881e-19 1.866534e-20
10 8006812 8061668 NM_002110 HCK link to infopage 0.789749 1.362317e-23 2.360486e-19 2.360486e-20
11 8006812 8077652 NM_005718 ARPC4 link to infopage 0.789580 1.413388e-23 2.448978e-19 2.226344e-20
12 8006812 7937287 NM_002817 PSMD13 link to infopage 0.785373 3.488195e-23 6.043995e-19 5.036662e-20
13 8006812 8125500 NM_004159 PSMB8 link to infopage 0.783007 5.747237e-23 9.958238e-19 7.660183e-20
14 8006812 8178855 NM_004159 PSMB8 link to infopage 0.783007 5.747237e-23 9.958238e-19 7.113027e-20
15 8006812 8180049 NM_004159 PSMB8 link to infopage 0.783007 5.747237e-23 9.958238e-19 6.638825e-20
16 8006812 7978201 NM_006156 NEDD8 link to infopage 0.782670 6.167527e-23 1.068647e-18 6.679047e-20
17 8006812 8009653 NM_007261 CD300A link to infopage 0.782209 6.791633e-23 1.176786e-18 6.922273e-20
18 8006812 8036808 NM_018457 PRR13 link to infopage 0.781078 8.594788e-23 1.489219e-18 8.273438e-20
19 8006812 8110022 NM_003945 ATP6V0E1 link to infopage 0.779865 1.104781e-22 1.914254e-18 1.007502e-19
20 8006812 7919619 NM_003516 HIST2H2AA3 link to infopage 0.779072 1.300504e-22 2.253383e-18 1.126691e-19
21 8006812 7905079 NM_003516 HIST2H2AA3 link to infopage 0.779072 1.300504e-22 2.253383e-18 1.073039e-19
22 8006812 8018364 NM_002086 GRB2 link to infopage 0.778953 1.332827e-22 2.309388e-18 1.049722e-19
23 8006812 7937465 NM_006755 TALDO1 link to infopage 0.778207 1.552699e-22 2.690362e-18 1.169723e-19
24 8006812 8168500 NM_000291 PGK1 link to infopage 0.777581 1.764414e-22 3.057201e-18 1.273834e-19
25 8006812 8048752 NM_022915 MRPL44 link to infopage 0.769443 8.957548e-22 1.552074e-17 6.208298e-19
26 8006812 8077550 NM_001077525 MTMR14 link to infopage 0.768964 9.835748e-22 1.704240e-17 6.554770e-19
27 8006812 7899361 NM_177424 STX12 link to infopage 0.768291 1.121318e-21 1.942908e-17 7.195955e-19
28 8006812 7955810 NM_018457 PRR13 link to infopage 0.766803 1.495709e-21 2.591615e-17 9.255766e-19
29 8006812 8019046 NM_014740 EIF4A3 link to infopage 0.766111 1.709115e-21 2.961384e-17 1.021167e-18
30 8006812 7973564 NM_176783 PSME1 link to infopage 0.765404 1.957387e-21 3.391565e-17 1.130522e-18
31 8006812 7906703 NM_004550 NDUFS2 link to infopage 0.765338 1.982260e-21 3.434662e-17 1.107956e-18
32 8006812 7963911 NM_001780 CD63 link to infopage 0.764518 2.318577e-21 4.017399e-17 1.255437e-18
33 8006812 8082431 NM_004637 RAB7A link to infopage 0.763075 3.050546e-21 5.285682e-17 1.601722e-18
34 8006812 8036224 NM_003332 TYROBP link to infopage 0.761637 4.002138e-21 6.934505e-17 2.039560e-18
35 8006812 7918345 NM_002790 PSMA5 link to infopage 0.761245 4.307609e-21 7.463794e-17 2.132513e-18
36 8006812 7978208 NM_012461 TINF2 link to infopage 0.760194 5.244685e-21 9.087466e-17 2.524296e-18
37 8006812 7994659 NM_017458 MVP link to infopage 0.760159 5.279577e-21 9.147922e-17 2.472411e-18
38 8006812 8039796 NM_014453 CHMP2A link to infopage 0.758501 7.185582e-21 1.245046e-16 3.276436e-18
39 8006812 8174076 NM_000169 GLA link to infopage 0.758456 7.245955e-21 1.255507e-16 3.219248e-18
40 8006812 7914218 NM_001135218 TAF12 link to infopage 0.758289 7.473551e-21 1.294942e-16 3.237355e-18
41 8006812 8116020 NM_006816 LMAN2 link to infopage 0.751651 2.503782e-20 4.338303e-16 1.058123e-17
42 8006812 7980146 NM_006432 NPC2 link to infopage 0.749660 3.571858e-20 6.188959e-16 1.473562e-17
43 8006812 7982531 NM_006305 ANP32A link to infopage 0.749131 3.923049e-20 6.797467e-16 1.580806e-17
44 8006812 8035553 NM_007263 COPE link to infopage 0.748456 4.420516e-20 7.659427e-16 1.740779e-17
45 8006812 8080923 NM_002802 PSMC1 link to infopage 0.747111 5.600909e-20 9.704694e-16 2.156599e-17
46 8006812 8089911 NM_005335 HCLS1 link to infopage 0.746566 6.162248e-20 1.067733e-15 2.321158e-17
47 8006812 8032909 NM_005817 PLIN3 link to infopage 0.746199 6.571258e-20 1.138602e-15 2.422557e-17
48 8006812 8030374 NM_004107 FCGRT link to infopage 0.746058 6.734693e-20 1.166920e-15 2.431084e-17
49 8006812 7905395 NM_002796 PSMB4 link to infopage 0.744264 9.199179e-20 1.593942e-15 3.252942e-17
50 8006812 8047059 NM_031314 HNRNPC link to infopage 0.744209 9.287836e-20 1.609303e-15 3.218607e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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