[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
15134	8125500	NM_004159	PSMB8		proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7)
15135	8178855	NM_004159	PSMB8		proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7)
15136	8180049	NM_004159	PSMB8		proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7)

Fetching correlation data, please wait...
Getting list of correlations for id 15134.
Getting list of p-values for id 15134.
1 of 3 done.
Getting list of correlations for id 15135.
Getting list of p-values for id 15135.
2 of 3 done.
Getting list of correlations for id 15136.
Getting list of p-values for id 15136.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.253 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8125500	8180049	NM_004159	PSMB8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178855	8180049	NM_004159	PSMB8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8178855	8125500	NM_004159	PSMB8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8180049	8178855	NM_004159	PSMB8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8125500	8178855	NM_004159	PSMB8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8180049	8125500	NM_004159	PSMB8	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8180049	8179495	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	1.670173e-22
8	8178855	8179495	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	1.461402e-22
9	8180049	8178211	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	1.299024e-22
10	8125500	8178211	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	1.169121e-22
11	8125500	8179495	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	1.062838e-22
12	8178855	8118571	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	9.742678e-23
13	8178855	8178211	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	8.993242e-23
14	8125500	8118571	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	8.350867e-23
15	8180049	8118571	NM_002800	PSMB9	0.817011	2.249132e-26	1.169121e-21	7.794143e-23
16	8178855	8048752	NM_022915	MRPL44	0.795422	3.893152e-24	2.023699e-19	1.264812e-20
17	8125500	8048752	NM_022915	MRPL44	0.795422	3.893152e-24	2.023699e-19	1.190411e-20
18	8180049	8048752	NM_022915	MRPL44	0.795422	3.893152e-24	2.023699e-19	1.124277e-20
19	8125500	8006812	NM_002795	PSMB3	0.783007	5.747237e-23	2.987471e-18	1.572353e-19
20	8180049	8006812	NM_002795	PSMB3	0.783007	5.747237e-23	2.987471e-18	1.493736e-19
21	8178855	8006812	NM_002795	PSMB3	0.783007	5.747237e-23	2.987471e-18	1.422605e-19
22	8180049	7951397	NM_033292	CASP1	0.780535	9.618314e-23	4.999696e-18	2.272589e-19
23	8178855	7951397	NM_033292	CASP1	0.780535	9.618314e-23	4.999696e-18	2.173781e-19
24	8125500	7951397	NM_033292	CASP1	0.780535	9.618314e-23	4.999696e-18	2.083206e-19
25	8180049	7980146	NM_006432	NPC2	0.777751	1.704506e-22	8.860194e-18	3.544077e-19
26	8178855	7980146	NM_006432	NPC2	0.777751	1.704506e-22	8.860194e-18	3.407767e-19
27	8125500	7980146	NM_006432	NPC2	0.777751	1.704506e-22	8.860194e-18	3.281553e-19
28	8180049	8042391	NM_002664	PLEK	0.776781	2.076138e-22	1.079197e-17	3.854276e-19
29	8178855	8042391	NM_002664	PLEK	0.776781	2.076138e-22	1.079197e-17	3.721370e-19
30	8125500	8042391	NM_002664	PLEK	0.776781	2.076138e-22	1.079197e-17	3.597324e-19
31	8125500	7917532	NM_004120	GBP2	0.775777	2.544339e-22	1.322573e-17	4.266364e-19
32	8178855	7917532	NM_004120	GBP2	0.775777	2.544339e-22	1.322573e-17	4.133041e-19
33	8180049	7917532	NM_004120	GBP2	0.775777	2.544339e-22	1.322573e-17	4.007797e-19
34	8180049	7983512	NM_021199	SQRDL	0.771059	6.521494e-22	3.389938e-17	9.970406e-19
35	8125500	7983512	NM_021199	SQRDL	0.771059	6.521494e-22	3.389938e-17	9.685537e-19
36	8178855	7983512	NM_021199	SQRDL	0.771059	6.521494e-22	3.389938e-17	9.416495e-19
37	8178855	8008113	NM_005831	CALCOCO2	0.769664	8.578484e-22	4.459182e-17	1.205184e-18
38	8180049	8008113	NM_005831	CALCOCO2	0.769664	8.578484e-22	4.459182e-17	1.173469e-18
39	8125500	8008113	NM_005831	CALCOCO2	0.769664	8.578484e-22	4.459182e-17	1.143380e-18
40	8125500	7918345	NM_002790	PSMA5	0.759463	6.011057e-21	3.124608e-16	7.811519e-18
41	8178855	7918345	NM_002790	PSMA5	0.759463	6.011057e-21	3.124608e-16	7.620995e-18
42	8180049	7918345	NM_002790	PSMA5	0.759463	6.011057e-21	3.124608e-16	7.439542e-18
43	8125500	8110022	NM_003945	ATP6V0E1	0.759456	6.018037e-21	3.128236e-16	7.274968e-18
44	8178855	8110022	NM_003945	ATP6V0E1	0.759456	6.018037e-21	3.128236e-16	7.109627e-18
45	8180049	8110022	NM_003945	ATP6V0E1	0.759456	6.018037e-21	3.128236e-16	6.951636e-18
46	8125500	8089527	NM_022488	ATG3	0.757367	8.861387e-21	4.606238e-16	1.001356e-17
47	8178855	8089527	NM_022488	ATG3	0.757367	8.861387e-21	4.606238e-16	9.800506e-18
48	8180049	8089527	NM_022488	ATG3	0.757367	8.861387e-21	4.606238e-16	9.596329e-18
49	8178855	7917528	ENST00000439531		0.751224	2.702497e-20	1.404785e-15	2.866908e-17
50	8180049	7917528	ENST00000439531		0.751224	2.702497e-20	1.404785e-15	2.809570e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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