[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
16721	8118571	NM_002800	PSMB9		proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2)
16722	8178211	NM_002800	PSMB9		proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2)
16723	8179495	NM_002800	PSMB9		proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional peptidase 2)

Fetching correlation data, please wait...
Getting list of correlations for id 16721.
Getting list of p-values for id 16721.
1 of 3 done.
Getting list of correlations for id 16722.
Getting list of p-values for id 16722.
2 of 3 done.
Getting list of correlations for id 16723.
Getting list of p-values for id 16723.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.259 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8118571	8178211	NM_002800	PSMB9	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178211	8179495	NM_002800	PSMB9	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8118571	8179495	NM_002800	PSMB9	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
4	8179495	8178211	NM_002800	PSMB9	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
5	8179495	8118571	NM_002800	PSMB9	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
6	8178211	8118571	NM_002800	PSMB9	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
7	8179495	8125500	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	1.670173e-22
8	8179495	8178855	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	1.461402e-22
9	8179495	8180049	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	1.299024e-22
10	8118571	8180049	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	1.169121e-22
11	8178211	8180049	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	1.062838e-22
12	8178211	8125500	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	9.742678e-23
13	8178211	8178855	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	8.993242e-23
14	8118571	8178855	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	8.350867e-23
15	8118571	8125500	NM_004159	PSMB8	0.817011	2.249132e-26	1.169121e-21	7.794143e-23
16	8179495	8059361	NM_020830	WDFY1	0.775487	2.697473e-22	1.402173e-17	8.763582e-19
17	8178211	8059361	NM_020830	WDFY1	0.775487	2.697473e-22	1.402173e-17	8.248078e-19
18	8118571	8059361	NM_020830	WDFY1	0.775487	2.697473e-22	1.402173e-17	7.789851e-19
19	8118571	7917532	NM_004120	GBP2	0.773005	4.435315e-22	2.305521e-17	1.213432e-18
20	8179495	7917532	NM_004120	GBP2	0.773005	4.435315e-22	2.305521e-17	1.152761e-18
21	8178211	7917532	NM_004120	GBP2	0.773005	4.435315e-22	2.305521e-17	1.097867e-18
22	8179495	7958828	NM_001143906	TRAFD1	0.771734	5.707554e-22	2.966844e-17	1.348565e-18
23	8118571	7958828	NM_001143906	TRAFD1	0.771734	5.707554e-22	2.966844e-17	1.289932e-18
24	8178211	7958828	NM_001143906	TRAFD1	0.771734	5.707554e-22	2.966844e-17	1.236185e-18
25	8118571	7945962	NM_003141	TRIM21	0.758104	7.733880e-21	4.020148e-16	1.608059e-17
26	8178211	7945962	NM_003141	TRIM21	0.758104	7.733880e-21	4.020148e-16	1.546211e-17
27	8179495	7945962	NM_003141	TRIM21	0.758104	7.733880e-21	4.020148e-16	1.488944e-17
28	8179495	8042391	NM_002664	PLEK	0.746873	5.839782e-20	3.035577e-15	1.084135e-16
29	8118571	8042391	NM_002664	PLEK	0.746873	5.839782e-20	3.035577e-15	1.046751e-16
30	8178211	8042391	NM_002664	PLEK	0.746873	5.839782e-20	3.035577e-15	1.011859e-16
31	8179495	8110022	NM_003945	ATP6V0E1	0.728514	1.278185e-18	6.644136e-14	2.143270e-15
32	8178211	8110022	NM_003945	ATP6V0E1	0.728514	1.278185e-18	6.644136e-14	2.076292e-15
33	8118571	8110022	NM_003945	ATP6V0E1	0.728514	1.278185e-18	6.644136e-14	2.013374e-15
34	8179495	7951397	NM_033292	CASP1	0.719616	5.219364e-18	2.713078e-13	7.979641e-15
35	8118571	7951397	NM_033292	CASP1	0.719616	5.219364e-18	2.713078e-13	7.751651e-15
36	8178211	7951397	NM_033292	CASP1	0.719616	5.219364e-18	2.713078e-13	7.536327e-15
37	8178211	8048752	NM_022915	MRPL44	0.717701	7.015510e-18	3.646732e-13	9.856032e-15
38	8179495	8048752	NM_022915	MRPL44	0.717701	7.015510e-18	3.646732e-13	9.596663e-15
39	8118571	8048752	NM_022915	MRPL44	0.717701	7.015510e-18	3.646732e-13	9.350595e-15
40	8179495	8057744	NM_007315	STAT1	0.716371	8.602685e-18	4.471762e-13	1.117940e-14
41	8178211	8057744	NM_007315	STAT1	0.716371	8.602685e-18	4.471762e-13	1.090674e-14
42	8118571	8057744	NM_007315	STAT1	0.716371	8.602685e-18	4.471762e-13	1.064705e-14
43	8118571	7973618	NM_006084	IRF9	0.716095	8.973540e-18	4.664536e-13	1.084776e-14
44	8178211	7973618	NM_006084	IRF9	0.716095	8.973540e-18	4.664536e-13	1.060122e-14
45	8179495	7973618	NM_006084	IRF9	0.716095	8.973540e-18	4.664536e-13	1.036563e-14
46	8178211	7983512	NM_021199	SQRDL	0.713312	1.369143e-17	7.116940e-13	1.547161e-14
47	8118571	7983512	NM_021199	SQRDL	0.713312	1.369143e-17	7.116940e-13	1.514243e-14
48	8179495	7983512	NM_021199	SQRDL	0.713312	1.369143e-17	7.116940e-13	1.482696e-14
49	8118571	7917576	NM_052942	GBP5	0.712744	1.491591e-17	7.753441e-13	1.582335e-14
50	8179495	7917576	NM_052942	GBP5	0.712744	1.491591e-17	7.753441e-13	1.550688e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation