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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
11409 7937287 NM_002817 PSMD13 link to infopage proteasome (prosome, macropain) 26S subunit, non-ATPase, 13

Fetching correlation data, please wait...
Getting list of correlations for id 11409.
Getting list of p-values for id 11409.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7937287 8063369 NM_018683 RNF114 link to infopage 0.812973 6.201927e-26 1.074608e-21 1.074608e-21
2 7937287 7978201 NM_006156 NEDD8 link to infopage 0.810972 1.016060e-25 1.760527e-21 8.802637e-22
3 7937287 8019046 NM_014740 EIF4A3 link to infopage 0.797412 2.485275e-24 4.306237e-20 1.435412e-20
4 7937287 8164067 NM_002799 PSMB7 link to infopage 0.797354 2.518532e-24 4.363861e-20 1.090965e-20
5 7937287 8013741 NM_006923 SDF2 link to infopage 0.788236 1.890535e-23 3.275730e-19 6.551459e-20
6 7937287 8006812 NM_002795 PSMB3 link to infopage 0.785373 3.488195e-23 6.043995e-19 1.007332e-19
7 7937287 8080923 NM_002802 PSMC1 link to infopage 0.781130 8.502214e-23 1.473179e-18 2.104541e-19
8 7937287 7935647 NM_078470 COX15 link to infopage 0.779029 1.312090e-22 2.273459e-18 2.841823e-19
9 7937287 7976189 NM_002802 PSMC1 link to infopage 0.778930 1.339067e-22 2.320201e-18 2.578001e-19
10 7937287 8132646 NM_031443 CCM2 link to infopage 0.771869 5.557762e-22 9.629934e-18 9.629934e-19
11 7937287 8028514 NM_013234 EIF3K link to infopage 0.769841 8.285279e-22 1.435590e-17 1.305082e-18
12 7937287 7921752 NM_001025598 ARHGAP30 link to infopage 0.766774 1.504218e-21 2.606358e-17 2.171965e-18
13 7937287 8089911 NM_005335 HCLS1 link to infopage 0.766280 1.654344e-21 2.866482e-17 2.204986e-18
14 7937287 8048752 NM_022915 MRPL44 link to infopage 0.760911 4.586020e-21 7.946197e-17 5.675855e-18
15 7937287 8061186 NM_006363 SEC23B link to infopage 0.760528 4.927236e-21 8.537422e-17 5.691614e-18
16 7937287 7977657 NM_031314 HNRNPC link to infopage 0.760243 5.197465e-21 9.005647e-17 5.628529e-18
17 7937287 8108424 NM_001033112 PAIP2 link to infopage 0.760170 5.268152e-21 9.128127e-17 5.369487e-18
18 7937287 7983512 NM_021199 SQRDL link to infopage 0.758406 7.313828e-21 1.267267e-16 7.040372e-18
19 7937287 8110022 NM_003945 ATP6V0E1 link to infopage 0.756726 9.970085e-21 1.727517e-16 9.092193e-18
20 7937287 7914218 NM_001135218 TAF12 link to infopage 0.754268 1.561778e-20 2.706092e-16 1.353046e-17
21 7937287 7897078 NM_007033 RER1 link to infopage 0.754134 1.600005e-20 2.772328e-16 1.320156e-17
22 7937287 8088384 NM_000925 PDHB link to infopage 0.752978 1.972048e-20 3.416968e-16 1.553167e-17
23 7937287 7960553 NM_016497 MRPL51 link to infopage 0.752817 2.030487e-20 3.518225e-16 1.529663e-17
24 7937287 8116020 NM_006816 LMAN2 link to infopage 0.752404 2.187097e-20 3.789582e-16 1.578993e-17
25 7937287 7963911 NM_001780 CD63 link to infopage 0.751440 2.600021e-20 4.505056e-16 1.802023e-17
26 7937287 7917472 NM_001514 GTF2B link to infopage 0.750112 3.295855e-20 5.710728e-16 2.196434e-17
27 7937287 8074969 NM_001355 DDT link to infopage 0.749635 3.587197e-20 6.215536e-16 2.302050e-17
28 7937287 7978208 NM_012461 TINF2 link to infopage 0.749017 4.002637e-20 6.935369e-16 2.476918e-17
29 7937287 7950644 NM_004549 NDUFC2 link to infopage 0.748887 4.096202e-20 7.097490e-16 2.447410e-17
30 7937287 7899361 NM_177424 STX12 link to infopage 0.748140 4.673415e-20 8.097627e-16 2.699209e-17
31 7937287 8009932 NM_013260 SAP30BP link to infopage 0.746783 5.932166e-20 1.027866e-15 3.315698e-17
32 7937287 8168500 NM_000291 PGK1 link to infopage 0.746340 6.411033e-20 1.110840e-15 3.471374e-17
33 7937287 8049180 NM_004846 EIF4E2 link to infopage 0.745493 7.431619e-20 1.287677e-15 3.902050e-17
34 7937287 7979473 NM_016029 DHRS7 link to infopage 0.744577 8.714794e-20 1.510012e-15 4.441213e-17
35 7937287 7941709 NM_002896 RBM4 link to infopage 0.744495 8.838353e-20 1.531421e-15 4.375490e-17
36 7937287 7918345 NM_002790 PSMA5 link to infopage 0.744226 9.260445e-20 1.604557e-15 4.457104e-17
37 7937287 7916372 NM_004872 TMEM59 link to infopage 0.744022 9.592535e-20 1.662099e-15 4.492158e-17
38 7937287 7906703 NM_004550 NDUFS2 link to infopage 0.743959 9.698073e-20 1.680385e-15 4.422066e-17
39 7937287 8047059 NM_031314 HNRNPC link to infopage 0.743474 1.054504e-19 1.827140e-15 4.684974e-17
40 7937287 8001185 NM_005880 DNAJA2 link to infopage 0.743341 1.079079e-19 1.869720e-15 4.674301e-17
41 7937287 7973564 NM_176783 PSME1 link to infopage 0.741707 1.428760e-19 2.475612e-15 6.038077e-17
42 7937287 7974725 NM_016475 JKAMP link to infopage 0.741190 1.560652e-19 2.704142e-15 6.438433e-17
43 7937287 7962869 NM_004818 DDX23 link to infopage 0.740454 1.769359e-19 3.065769e-15 7.129694e-17
44 7937287 7996725 NM_017803 DUS2L link to infopage 0.740009 1.908271e-19 3.306462e-15 7.514686e-17
45 7937287 8134552 NM_005720 ARPC1B link to infopage 0.739663 2.023752e-19 3.506554e-15 7.792343e-17
46 7937287 8160587 NM_002493 NDUFB6 link to infopage 0.739553 2.061694e-19 3.572297e-15 7.765862e-17
47 7937287 7900922 NM_004047 ATP6V0B link to infopage 0.738627 2.411034e-19 4.177599e-15 8.888509e-17
48 7937287 8180049 NM_004159 PSMB8 link to infopage 0.738433 2.491174e-19 4.316458e-15 8.992620e-17
49 7937287 8125500 NM_004159 PSMB8 link to infopage 0.738433 2.491174e-19 4.316458e-15 8.809097e-17
50 7937287 8178855 NM_004159 PSMB8 link to infopage 0.738433 2.491174e-19 4.316458e-15 8.632915e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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