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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
13044 8018305 NM_016185 HN1 link to infopage hematological and neurological expressed 1

Fetching correlation data, please wait...
Getting list of correlations for id 13044.
Getting list of p-values for id 13044.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.161 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8018305 8018364 NM_002086 GRB2 link to infopage 0.850051 1.925337e-30 3.336031e-26 3.336031e-26
2 8018305 8036710 NM_004877 GMFG link to infopage 0.840304 3.799575e-29 6.583523e-25 3.291762e-25
3 8018305 8025076 NM_005428 VAV1 link to infopage 0.832662 3.436274e-28 5.954031e-24 1.984677e-24
4 8018305 8039796 NM_014453 CHMP2A link to infopage 0.829468 8.347467e-28 1.446366e-23 3.615914e-24
5 8018305 7983512 NM_021199 SQRDL link to infopage 0.829114 9.200978e-28 1.594253e-23 3.188507e-24
6 8018305 8006812 NM_002795 PSMB3 link to infopage 0.824619 3.102624e-27 5.375916e-23 8.959860e-24
7 8018305 7973660 NM_016576 GMPR2 link to infopage 0.820074 1.024578e-26 1.775286e-22 2.536123e-23
8 8018305 7937465 NM_006755 TALDO1 link to infopage 0.818152 1.681126e-26 2.912887e-22 3.641109e-23
9 8018305 8036808 NM_018457 PRR13 link to infopage 0.815431 3.355092e-26 5.813369e-22 6.459299e-23
10 8018305 7900922 NM_004047 ATP6V0B link to infopage 0.812373 7.195127e-26 1.246700e-21 1.246700e-22
11 8018305 8061668 NM_002110 HCK link to infopage 0.810955 1.020214e-25 1.767724e-21 1.607022e-22
12 8018305 7963911 NM_001780 CD63 link to infopage 0.806105 3.294880e-25 5.709039e-21 4.757533e-22
13 8018305 8160587 NM_002493 NDUFB6 link to infopage 0.802654 7.436796e-25 1.288574e-20 9.912105e-22
14 8018305 7994756 NM_002720 PPP4C link to infopage 0.802260 8.154109e-25 1.412862e-20 1.009187e-21
15 8018305 7955810 NM_018457 PRR13 link to infopage 0.802126 8.412656e-25 1.457661e-20 9.717739e-22
16 8018305 8065433 NM_020531 C20orf3 link to infopage 0.796292 3.201475e-24 5.547196e-20 3.466997e-21
17 8018305 8013741 NM_006923 SDF2 link to infopage 0.792471 7.505608e-24 1.300497e-19 7.649981e-21
18 8018305 8072744 NM_013416 NCF4 link to infopage 0.791695 8.905497e-24 1.543055e-19 8.572530e-21
19 8018305 7905571 NM_002965 S100A9 link to infopage 0.787701 2.121247e-23 3.675485e-19 1.934466e-20
20 8018305 8030374 NM_004107 FCGRT link to infopage 0.787320 2.302492e-23 3.989528e-19 1.994764e-20
21 8018305 8168852 NM_019597 HNRNPH2 link to infopage 0.785703 3.252424e-23 5.635474e-19 2.683559e-20
22 8018305 8044919 NM_002881 RALB link to infopage 0.783848 4.816608e-23 8.345737e-19 3.793517e-20
23 8018305 7956593 NM_006812 OS9 link to infopage 0.783259 5.451218e-23 9.445325e-19 4.106663e-20
24 8018305 7963054 NM_006009 TUBA1A link to infopage 0.781023 8.694056e-23 1.506419e-18 6.276746e-20
25 8018305 8132646 NM_031443 CCM2 link to infopage 0.779636 1.157978e-22 2.006428e-18 8.025714e-20
26 8018305 8089911 NM_005335 HCLS1 link to infopage 0.778241 1.542042e-22 2.671895e-18 1.027652e-19
27 8018305 8119000 NM_001315 MAPK14 link to infopage 0.775369 2.762303e-22 4.786243e-18 1.772682e-19
28 8018305 7978201 NM_006156 NEDD8 link to infopage 0.774176 3.510831e-22 6.083217e-18 2.172578e-19
29 8018305 7914218 NM_001135218 TAF12 link to infopage 0.774102 3.563195e-22 6.173947e-18 2.128947e-19
30 8018305 8178598 NM_001288 CLIC1 link to infopage 0.772188 5.217028e-22 9.039544e-18 3.013181e-19
31 8018305 8032909 NM_005817 PLIN3 link to infopage 0.771422 6.071369e-22 1.051986e-17 3.393504e-19
32 8018305 8179827 NM_001288 CLIC1 link to infopage 0.771073 6.503824e-22 1.126918e-17 3.521617e-19
33 8018305 7938880 NM_001098520 HTATIP2 link to infopage 0.769729 8.468518e-22 1.467340e-17 4.446485e-19
34 8018305 8124828 NM_005803 FLOT1 link to infopage 0.765156 2.052811e-21 3.556905e-17 1.046149e-18
35 8018305 8179688 NM_005803 FLOT1 link to infopage 0.765156 2.052811e-21 3.556905e-17 1.016259e-18
36 8018305 8178419 NM_005803 FLOT1 link to infopage 0.765156 2.052811e-21 3.556905e-17 9.880293e-19
37 8018305 8102860 NM_002107 H3F3A link to infopage 0.764180 2.472852e-21 4.284711e-17 1.158030e-18
38 8018305 8125059 NM_001288 CLIC1 link to infopage 0.763641 2.739942e-21 4.747498e-17 1.249342e-18
39 8018305 7964745 NM_016056 TMBIM4 link to infopage 0.763242 2.955524e-21 5.121036e-17 1.313086e-18
40 8018305 8134552 NM_005720 ARPC1B link to infopage 0.760681 4.788499e-21 8.297032e-17 2.074258e-18
41 8018305 8163185 NM_003329 TXN link to infopage 0.759677 5.776317e-21 1.000862e-16 2.441128e-18
42 8018305 7932069 NM_014142 NUDT5 link to infopage 0.759053 6.486233e-21 1.123870e-16 2.675880e-18
43 8018305 7998637 NM_016332 SEPX1 link to infopage 0.756611 1.018219e-20 1.764269e-16 4.102951e-18
44 8018305 7900382 NM_006367 CAP1 link to infopage 0.756539 1.031776e-20 1.787758e-16 4.063087e-18
45 8018305 8093462 NM_001017405 MAEA link to infopage 0.756517 1.036043e-20 1.795152e-16 3.989226e-18
46 8018305 7967322 NM_006018 GPR109B link to infopage 0.756448 1.049144e-20 1.817851e-16 3.951851e-18
47 8018305 7967318 NM_177551 GPR109A link to infopage 0.755950 1.149329e-20 1.991442e-16 4.237112e-18
48 8018305 8116020 NM_006816 LMAN2 link to infopage 0.755470 1.254711e-20 2.174037e-16 4.529244e-18
49 8018305 7979473 NM_016029 DHRS7 link to infopage 0.753927 1.661153e-20 2.878280e-16 5.874040e-18
50 8018305 7917472 NM_001514 GTF2B link to infopage 0.752995 1.966073e-20 3.406615e-16 6.813230e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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